Myungseo Yoon

This is Myungseo's Yoon.
E-mail address : porori3000@naver.com

 

Contents

External Links to study Bioinformatics

Next Generation Sequencing (NGS) - Introduction document (Illumina)
FASTQ format : a text-based format for storing both a biological sequence (usually nucleotide sequence) and its corresponding quality scores.
FASTA format : a text-based format for representing either nucleotide sequences or peptide sequences, in which nucleotides or amino acids are represented using single-letter codes.
SAMtools : a set of utilities for interacting with and post-processing short DNA sequence read alignments.
KEGG: Kyoto Encyclopedia of Genes and Genomes
KAAS: KEGG Automatic Annotation Server - Help
dN/dS ratio
TimeTree :: a public resource for knowledge on the timescale and evolutionary history of life. Search the database below or go to the TIMETREE OF LIFE for other resources.
SCOP: Structural Classification of Proteins
Motif, Domain, and Tools for searching these.
Statistics: Basics of statistical analysis (Korean)
Statistics: T-distribution (Korean)
Bayesian Probability 1 2 3
PSMC (Pairwise Sequentially Markovian Coalescent) analysis 
What the FPKM? A review of RNA-Seq expression units

Paper Links
Research contained Domain Expansion/Contraction Analysis
A Tool Introduction "CAFE: a computational tool for the study of gene family evolution"
...

External Links to study Programming (Perl)

Perl Basics(Korean)
How to sort array of mixed strings (string+number) by number(Korean)
File handle, directory working and globbing
Regular expression
Convert between scientific and decimal notation
...

 

Homeworks

YMS_HW1 : Make a Perl program translating 'all' combinations of triple bases into amino acids.
YMS_HW2 : What is the most important thing in your life? (20 words)
YMS_HW3 : Write an essay about the news article.
YMS_HW4 : Write an essay about the news article.

Project candidates

1. About Genomic Features of Asperger Syndrome.
 Asperger syndrome (AS), also known as Aspergers, is a developmental disorder characterized by significant difficulties in social interaction and nonverbal communication, along with restricted and repetitive patterns of behavior and interests.
Related contents ...
  Paper: A Pooled Genome-Wide Association Study of Asperger Syndrome

 

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