Difference between revisions of "Jong Bhak's Genomics Syllabus"
From Biolecture.org
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<div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%"><span style="font-size:24px"><strong><span style="color:black">(No mid-term exam)</span></strong></span></div> | <div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%"><span style="font-size:24px"><strong><span style="color:black">(No mid-term exam)</span></strong></span></div> | ||
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| + | <div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%"><span style="color:#B22222"><span style="font-size:24px"><strong>* This syllabus can be changed any time in any year!</strong></span></span></div> | ||
<div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%"> | <div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%"> | ||
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| − | <td style="height: 14.7pt; width: 40.8pt"> | + | <td style="height:14.7pt; width:40.8pt"> |
| − | <p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">Week</span></span></p> | + | <p style="text-align:center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">Week</span></span></p> |
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| − | <td style="height: 14.7pt; width: 410.2pt"> | + | <td style="height:14.7pt; width:410.2pt"> |
| − | <p style="text-align: center"><span style="font-size:22px"><span style="color:black"><span style="color:black; font-family:arial unicode ms">Contents</span></span></span></p> | + | <p style="text-align:center"><span style="font-size:22px"><span style="color:black"><span style="color:black; font-family:arial unicode ms">Contents</span></span></span></p> |
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<tr> | <tr> | ||
| − | <td style="height: 35.65pt; width: 40.8pt | + | <td style="background-color:transparent; height:35.65pt; width:40.8pt"> |
| − | <p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">01</span></span></p> | + | <p style="text-align:center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">01</span></span></p> |
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| − | <td style="height: 35.65pt; width: 410.2pt | + | <td style="background-color:transparent; height:35.65pt; width:410.2pt"> |
<p><span style="font-size:16px"> </span><span style="color:black; font-size:12pt"> [[Introduction to Jong Bhak's genomics course]]</span></p> | <p><span style="font-size:16px"> </span><span style="color:black; font-size:12pt"> [[Introduction to Jong Bhak's genomics course]]</span></p> | ||
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| − | <td style="height: 35.65pt; width: 40.8pt | + | <td style="background-color:transparent; height:35.65pt; width:40.8pt"> |
| − | <p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">02</span></span></p> | + | <p style="text-align:center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">02</span></span></p> |
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| − | <td style="height: 35.65pt; width: 410.2pt | + | <td style="background-color:transparent; height:35.65pt; width:410.2pt"> |
<p><span style="color:black; font-size:12pt"> [[What is Sequencing in Genomics and Omics?]] (as an approach of understanding life)</span></p> | <p><span style="color:black; font-size:12pt"> [[What is Sequencing in Genomics and Omics?]] (as an approach of understanding life)</span></p> | ||
| − | <p style="text-align: left"><span style="color:black; font-size:12pt"> [[Sequencing]]: Sanger, NGS, Methyl-seq, ATAC-seq</span><br /> | + | <p style="text-align:left"><span style="color:black; font-size:12pt"> [[Sequencing]]: Sanger, NGS, Methyl-seq, ATAC-seq</span><br /> |
</p> | </p> | ||
</td> | </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td style="height: 35.65pt; width: 40.8pt | + | <td style="background-color:transparent; height:35.65pt; width:40.8pt"> |
| − | <p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">03</span></span></p> | + | <p style="text-align:center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">03</span></span></p> |
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<p><span style="color:black; font-size:12pt"> [[What is alignment?]], [[What is genome assembly?]], </span></p> | <p><span style="color:black; font-size:12pt"> [[What is alignment?]], [[What is genome assembly?]], </span></p> | ||
<p><span style="color:black; font-size:12pt"> [[What is functional annotation for Big data processing in biology?]]</span></p> | <p><span style="color:black; font-size:12pt"> [[What is functional annotation for Big data processing in biology?]]</span></p> | ||
| − | <p style="text-align: left"><span style="color:black; font-size:12pt"> Open source tools, concepts of alignment of DNA sequences.</span><br /> | + | <p style="text-align:left"><span style="color:black; font-size:12pt"> Open source tools, concepts of alignment of DNA sequences.</span><br /> |
</p> | </p> | ||
</td> | </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td style="height: 35.65pt; width: 40.8pt | + | <td style="background-color:transparent; height:35.65pt; width:40.8pt"> |
| − | <p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">04</span></span></p> | + | <p style="text-align:center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">04</span></span></p> |
</td> | </td> | ||
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<p><span style="color:black; font-size:12pt"> [[How molecules and cells propagate in the universe?]] [[Evolution]].</span></p> | <p><span style="color:black; font-size:12pt"> [[How molecules and cells propagate in the universe?]] [[Evolution]].</span></p> | ||
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<p><span style="color:black; font-size:12pt"> [[Phylogenetic tree]].</span></p> | <p><span style="color:black; font-size:12pt"> [[Phylogenetic tree]].</span></p> | ||
| − | <p style="text-align: left"><span style="color:black; font-size:12pt"> [[Selective sweep]] [[Convergent evolution]]</span></p> | + | <p style="text-align:left"><span style="color:black; font-size:12pt"> [[Selective sweep]] [[Convergent evolution]]</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td style="height: 35.65pt; width: 40.8pt | + | <td style="background-color:transparent; height:35.65pt; width:40.8pt"> |
| − | <p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">05</span></span></p> | + | <p style="text-align:center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">05</span></span></p> |
| − | <p style="text-align: center"><span style="font-size:9px"><span style="color:black"><span style="color:black; font-family:arial unicode ms">(2016.10.07)</span></span></span></p> | + | <p style="text-align:center"><span style="font-size:9px"><span style="color:black"><span style="color:black; font-family:arial unicode ms">(2016.10.07)</span></span></span></p> |
</td> | </td> | ||
| − | <td style="height: 35.65pt; width: 410.2pt | + | <td style="background-color:transparent; height:35.65pt; width:410.2pt"> |
| − | <p style="text-align: left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> <strong>Human genomes</strong></span></span></p> | + | <p style="text-align:left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> <strong>Human genomes</strong></span></span></p> |
<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> [[KPGP]], [[KOREF]], [[The first Korean genome]]</span></span></p> | <p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> [[KPGP]], [[KOREF]], [[The first Korean genome]]</span></span></p> | ||
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</tr> | </tr> | ||
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| − | <td style="height: 35.65pt; width: 40.8pt | + | <td style="background-color:transparent; height:35.65pt; width:40.8pt"> |
| − | <p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">06</span></span></p> | + | <p style="text-align:center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">06</span></span></p> |
| − | <p style="text-align: center"><span style="font-size:9px"><span style="color:black"><span style="color:black; font-family:arial unicode ms">(2016.10.08)</span></span></span></p> | + | <p style="text-align:center"><span style="font-size:9px"><span style="color:black"><span style="color:black; font-family:arial unicode ms">(2016.10.08)</span></span></span></p> |
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| − | <td style="height: 35.65pt; width: 410.2pt | + | <td style="background-color:transparent; height:35.65pt; width:410.2pt"> |
<p><span style="color:black; font-size:12pt"> Genome analyses cases</span></p> | <p><span style="color:black; font-size:12pt"> Genome analyses cases</span></p> | ||
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</tr> | </tr> | ||
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| − | <td style="height: 35.65pt; width: 40.8pt | + | <td style="background-color:transparent; height:35.65pt; width:40.8pt"> |
| − | <p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">07</span></span></p> | + | <p style="text-align:center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">07</span></span></p> |
</td> | </td> | ||
| − | <td style="height: 35.65pt; width: 410.2pt | + | <td style="background-color:transparent; height:35.65pt; width:410.2pt"> |
<p><span style="color:black; font-size:12pt"> Genome analyses cases</span></p> | <p><span style="color:black; font-size:12pt"> Genome analyses cases</span></p> | ||
| − | <p style="text-align: left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> [[<strong>Tiger genomes]]</strong></span></span></p> | + | <p style="text-align:left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> [[<strong>Tiger genomes]]</strong></span></span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td style="height: 35.65pt; width: 40.8pt | + | <td style="background-color:transparent; height:35.65pt; width:40.8pt"> |
| − | <p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">08</span></span></p> | + | <p style="text-align:center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">08</span></span></p> |
</td> | </td> | ||
| − | <td style="height: 35.65pt; width: 410.2pt | + | <td style="background-color:transparent; height:35.65pt; width:410.2pt"> |
<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> </span>Genome analyses cases</span></p> | <p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> </span>Genome analyses cases</span></p> | ||
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</tr> | </tr> | ||
<tr> | <tr> | ||
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| − | <p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">09</span></span></p> | + | <p style="text-align:center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">09</span></span></p> |
</td> | </td> | ||
| − | <td style="height: 35.65pt; width: 410.2pt | + | <td style="background-color:transparent; height:35.65pt; width:410.2pt"> |
<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> [[<strong>Transcriptome]]</strong>: </span>Genome analyses cases ([[horse transcriptome]])</span></p> | <p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> [[<strong>Transcriptome]]</strong>: </span>Genome analyses cases ([[horse transcriptome]])</span></p> | ||
</td> | </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td style="height: 35.65pt; width: 40.8pt | + | <td style="background-color:transparent; height:35.65pt; width:40.8pt"> |
| − | <p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">10</span></span></p> | + | <p style="text-align:center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">10</span></span></p> |
</td> | </td> | ||
| − | <td style="height: 35.65pt; width: 410.2pt | + | <td style="background-color:transparent; height:35.65pt; width:410.2pt"> |
<p><span style="color:black; font-size:12pt"> Curing Cancer using genomics (Oncomics)</span></p> | <p><span style="color:black; font-size:12pt"> Curing Cancer using genomics (Oncomics)</span></p> | ||
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</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td style="height: 35.65pt; width: 40.8pt | + | <td style="background-color:transparent; height:35.65pt; width:40.8pt"> |
| − | <p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">11</span></span></p> | + | <p style="text-align:center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">11</span></span></p> |
</td> | </td> | ||
| − | <td style="height: 35.65pt; width: 410.2pt | + | <td style="background-color:transparent; height:35.65pt; width:410.2pt"> |
<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> </span>Curing Cancer using genomics (Oncomics)</span></p> | <p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> </span>Curing Cancer using genomics (Oncomics)</span></p> | ||
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</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td style="height: 35.65pt; width: 40.8pt | + | <td style="background-color:transparent; height:35.65pt; width:40.8pt"> |
| − | <p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">12</span></span></p> | + | <p style="text-align:center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">12</span></span></p> |
</td> | </td> | ||
| − | <td style="height: 35.65pt; width: 410.2pt | + | <td style="background-color:transparent; height:35.65pt; width:410.2pt"> |
<p><span style="color:black; font-size:12pt"> Curing Aging using genomics (Geromics)</span></p> | <p><span style="color:black; font-size:12pt"> Curing Aging using genomics (Geromics)</span></p> | ||
| − | <p style="text-align: left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> [[Measuring aging biologically]]</span></span></p> | + | <p style="text-align:left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> [[Measuring aging biologically]]</span></span></p> |
| − | <p style="text-align: left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> [[Telomics]]</span></span></p> | + | <p style="text-align:left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> [[Telomics]]</span></span></p> |
| − | <p style="text-align: left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> [[Geromics Lecture related links: telomeres]]</span></span></p> | + | <p style="text-align:left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> [[Geromics Lecture related links: telomeres]]</span></span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td style="height: 35.65pt; width: 40.8pt | + | <td style="background-color:transparent; height:35.65pt; width:40.8pt"> |
| − | <p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">13</span></span></p> | + | <p style="text-align:center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">13</span></span></p> |
</td> | </td> | ||
| − | <td style="height: 35.65pt; width: 410.2pt | + | <td style="background-color:transparent; height:35.65pt; width:410.2pt"> |
<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> </span>Curing Aging using genomics (Geromics)</span></p> | <p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> </span>Curing Aging using genomics (Geromics)</span></p> | ||
| − | <p style="text-align: left"><span style="color:black; font-size:12pt"> Aging related keywords and genes</span></p> | + | <p style="text-align:left"><span style="color:black; font-size:12pt"> Aging related keywords and genes</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td style="height: 35.65pt; width: 40.8pt | + | <td style="background-color:transparent; height:35.65pt; width:40.8pt"> |
| − | <p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">14</span></span></p> | + | <p style="text-align:center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">14</span></span></p> |
</td> | </td> | ||
| − | <td style="height: 35.65pt; width: 410.2pt | + | <td style="background-color:transparent; height:35.65pt; width:410.2pt"> |
| − | <p style="text-align: left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> [[Epigenomics]] (Environmental genome)</span></span></p> | + | <p style="text-align:left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> [[Epigenomics]] (Environmental genome)</span></span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td style="height: 35.65pt; width: 40.8pt | + | <td style="background-color:transparent; height:35.65pt; width:40.8pt"> |
| − | <p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">15</span></span></p> | + | <p style="text-align:center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">15</span></span></p> |
</td> | </td> | ||
| − | <td style="height: 35.65pt; width: 410.2pt | + | <td style="background-color:transparent; height:35.65pt; width:410.2pt"> |
| − | <p style="text-align: left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> [[Research Report presentation]]</span></span></p> | + | <p style="text-align:left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif"> [[Research Report presentation]]</span></span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
Revision as of 12:31, 15 September 2018
Jong Bhak's Genomics course syllabus.
(No mid-term exam)
* This syllabus can be changed any time in any year!
Weekly Schedule
|
Week |
Contents |
|
01 |
Introduction to Jong Bhak's genomics course What is life?, What is information?, What is the universe? (as information processing objects) |
|
02 |
What is Sequencing in Genomics and Omics? (as an approach of understanding life) Sequencing: Sanger, NGS, Methyl-seq, ATAC-seq |
|
03 |
What is alignment?, What is genome assembly?, What is functional annotation for Big data processing in biology? Open source tools, concepts of alignment of DNA sequences. |
|
04 |
How molecules and cells propagate in the universe? Evolution. Close species Comparative Genomics (CSCG) for diverse genome evolution. |
|
05 (2016.10.07) |
Human genomes KPGP, KOREF, The first Korean genome
|
|
06 (2016.10.08) |
Genome analyses cases |
|
07 |
Genome analyses cases [[Tiger genomes]] |
|
08 |
Genome analyses cases |
|
09 |
[[Transcriptome]]: Genome analyses cases (horse transcriptome) |
|
10 |
Curing Cancer using genomics (Oncomics) Analysing disease genomes |
|
11 |
Curing Cancer using genomics (Oncomics) Diffuse type cancer analyses. |
|
12 |
Curing Aging using genomics (Geromics) |
|
13 |
Curing Aging using genomics (Geromics) Aging related keywords and genes |
|
14 |
Epigenomics (Environmental genome) |
|
15 |
