Difference between revisions of "Jong Bhak's Genomics Syllabus"

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<div style="margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all"><b><span style="font-size: 12pt; color: black; line-height: 160%">Jong Bhak's Genomics course syllabus.</span></b></div>
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<div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%"><strong><span style="color:black; font-size:12pt">Jong Bhak&#39;s Genomics course syllabus.</span></strong></div>
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<p style="word-break: keep-all; margin: 0cm 0cm 0pt; line-height: 160%; mso-pagination: widow-orphan"><span lang="EN-US" style="font-size: 12pt; font-family: &quot;Arial Unicode MS&quot;; color: black; line-height: 160%; mso-font-kerning: 0pt">Weekly Schedule</span></p>
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<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms; font-size:12pt">Weekly Schedule</span></span></p>
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            <p style="word-break: keep-all; text-align: center; margin: 0cm 0cm 0pt; line-height: 160%; mso-pagination: widow-orphan" align="center"><span lang="EN-US" style="font-family: &quot;Arial Unicode MS&quot;; color: black; line-height: 160%; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt"><font size="2">Week</font></span></p>
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<p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">Week</span></span></p>
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            <p style="word-break: keep-all; text-align: center; margin: 0cm 0cm 0pt; line-height: 160%; mso-pagination: widow-orphan" align="center"><span lang="EN-US" style="font-family: &quot;Arial Unicode MS&quot;; color: black; line-height: 160%; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt"><font size="2">Contents</font></span></p>
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<p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">Contents</span></span></p>
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            <p style="word-break: keep-all; text-align: center; margin: 0cm 0cm 0pt; mso-pagination: widow-orphan" align="center"><span lang="EN-US" style="font-family: &quot;Arial Unicode MS&quot;; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt"><font size="2">01</font></span></p>
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<p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">01</span></span></p>
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            <p style="margin: 0cm 0cm 0pt"><span lang="EN-US" style="font-family: &quot;바탕&quot;,serif; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt; mso-bidi-font-family: 굴림"><span style="mso-spacerun: yes"><font size="2">&nbsp;</font></span></span><span lang="EN-US"><font size="2" face="맑은 고딕">What is life, information, and the universe?&nbsp; (as information processing objects)</font></span></p>
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            <p style="word-break: keep-all; text-align: left; margin: 0cm 0cm 0pt; text-indent: 5pt; mso-pagination: widow-orphan; mso-char-indent-count: .5" align="left"><span lang="EN-US"><font size="2" face="맑은 고딕">Introduction to the course.</font></span></p>
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<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;</span>What is life, information, and the universe?&nbsp; (as information processing objects)</span></p>
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<p style="text-align: left"><span style="color:black; font-size:12pt">Introduction to the course.</span></p>
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            <p style="word-break: keep-all; text-align: center; margin: 0cm 0cm 0pt; mso-pagination: widow-orphan" align="center"><span lang="EN-US" style="font-family: &quot;Arial Unicode MS&quot;; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt"><font size="2">02</font></span></p>
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            <p style="margin: 0cm 0cm 0pt; text-indent: 10pt; mso-char-indent-count: 1.0"><span lang="EN-US"><font size="2" face="맑은 고딕">What is Sequencing in Genomics and Omics? (as an approach of understanding life)</font></span></p>
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<p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">02</span></span></p>
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            <p style="word-break: keep-all; text-align: left; margin: 0cm 0cm 0pt; text-indent: 5pt; mso-pagination: widow-orphan; mso-char-indent-count: .5" align="left"><span lang="EN-US"><font size="2" face="맑은 고딕">Sequencing<br style="mso-special-character: line-break" />
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<p><span style="color:black; font-size:12pt">What is Sequencing in Genomics and Omics? (as an approach of understanding life)</span></p>
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<p style="text-align: left"><span style="color:black; font-size:12pt">Sequencing</span><br />
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&nbsp;</p>
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            <p style="word-break: keep-all; text-align: center; margin: 0cm 0cm 0pt; mso-pagination: widow-orphan" align="center"><span lang="EN-US" style="font-family: &quot;Arial Unicode MS&quot;; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt"><font size="2">03</font></span></p>
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            <p style="margin: 0cm 0cm 0pt; text-indent: 10pt; mso-char-indent-count: 1.0"><span lang="EN-US"><font size="2" face="맑은 고딕">What is alignment, assembly, functional annotation for 'Big data' processing in biology?</font></span></p>
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<p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">03</span></span></p>
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            <p style="word-break: keep-all; text-align: left; margin: 0cm 0cm 0pt; text-indent: 25pt; mso-pagination: widow-orphan; mso-char-indent-count: 2.5" align="left"><span lang="EN-US"><font size="2" face="맑은 고딕">Open source tools, concepts of alignment of DNA sequences.<br style="mso-special-character: line-break" />
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<p><span style="color:black; font-size:12pt">What is alignment, assembly, functional annotation for &#39;Big data&#39; processing in biology?</span></p>
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<p style="text-align: left"><span style="color:black; font-size:12pt">Open source tools, concepts of alignment of DNA sequences.</span><br />
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&nbsp;</p>
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            <p style="word-break: keep-all; text-align: center; margin: 0cm 0cm 0pt; mso-pagination: widow-orphan" align="center"><span lang="EN-US" style="font-family: &quot;Arial Unicode MS&quot;; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt"><font size="2">04</font></span></p>
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            <p style="margin: 0cm 0cm 0pt; text-indent: 10pt; mso-char-indent-count: 1.0"><span lang="EN-US"><font size="2" face="맑은 고딕">How molecules and cells propagate in the universe? Evolution.</font></span></p>
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<p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">04</span></span></p>
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            <p style="margin: 0cm 0cm 0pt; text-indent: 10pt; mso-char-indent-count: 1.0"><span lang="EN-US"><font size="2" face="맑은 고딕">Close species Comparative Genomics (CSCG) for diverse genome evolution.</font></span></p>
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            <p style="margin: 0cm 0cm 0pt; text-indent: 10pt; mso-char-indent-count: 1.0"><span lang="EN-US"><font size="2" face="맑은 고딕">Phylogenetic tree.</font></span></p>
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            <p style="word-break: keep-all; text-align: left; margin: 0cm 0cm 0pt; mso-pagination: widow-orphan" align="left"><span lang="EN-US"><font size="2" face="맑은 고딕">Evolution</font></span></p>
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<p><span style="color:black; font-size:12pt">How molecules and cells propagate in the universe? Evolution.</span></p>
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<p><span style="color:black; font-size:12pt">Close species Comparative Genomics (CSCG) for diverse genome evolution.</span></p>
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<p><span style="color:black; font-size:12pt">Phylogenetic tree.</span></p>
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            <p style="word-break: keep-all; text-align: center; margin: 0cm 0cm 0pt; mso-pagination: widow-orphan" align="center"><span lang="EN-US" style="font-family: &quot;Arial Unicode MS&quot;; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt"><font size="2">05</font></span></p>
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<p style="text-align: left"><span style="color:black; font-size:12pt">Evolution</span></p>
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            <p style="word-break: keep-all; text-align: left; margin: 0cm 0cm 0pt; mso-pagination: widow-orphan" align="left"><span lang="EN-US" style="font-family: &quot;바탕&quot;,serif; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt; mso-bidi-font-family: 굴림"><font size="2">Human genomes</font></span></p>
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            <p style="margin: 0cm 0cm 0pt; text-indent: 10pt; mso-char-indent-count: 1.0"><span lang="EN-US" style="font-family: &quot;바탕&quot;,serif; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt; mso-bidi-font-family: 굴림"><span style="mso-spacerun: yes"><font size="2">&nbsp;&nbsp; </font></span><font size="2">KPGP, KOREF, [[The first Korean genome]]</font></span></p>
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            <p style="margin: 0cm 0cm 0pt; text-indent: 10pt; mso-char-indent-count: 1.0">&nbsp;</p>
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<p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">05</span></span></p>
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<p style="text-align: left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">Human genomes</span></span></p>
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<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;&nbsp; KPGP, KOREF, [[The first Korean genome]]</span></span></p>
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            <p style="margin: 0cm 0cm 0pt; text-indent: 10pt; mso-char-indent-count: 1.0"><span lang="EN-US"><font size="2" face="맑은 고딕">Genome analyses cases</font></span></p>
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<p><span style="color:black; font-size:12pt">&nbsp;</span></p>
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            <p style="margin: 0cm 0cm 0pt; text-indent: 10pt; mso-char-indent-count: 1.0"><span lang="EN-US" style="font-family: &quot;바탕&quot;,serif; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt; mso-bidi-font-family: 굴림"><span style="mso-spacerun: yes"><font size="2">&nbsp;</font></span></span><span lang="EN-US"><font size="2" face="맑은 고딕">Whale genomics</font></span></p>
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<p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">06</span></span></p>
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            <p style="word-break: keep-all; text-align: center; margin: 0cm 0cm 0pt; mso-pagination: widow-orphan" align="center"><span lang="EN-US" style="font-family: &quot;Arial Unicode MS&quot;; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt"><font size="2">07</font></span></p>
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<p><span style="color:black; font-size:12pt">Genome analyses cases</span></p>
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            <p style="margin: 0cm 0cm 0pt; text-indent: 5pt; mso-char-indent-count: .5"><span lang="EN-US"><font size="2" face="맑은 고딕">Genome analyses cases</font></span></p>
+
 
−
            <p style="word-break: keep-all; text-align: left; margin: 0cm 0cm 0pt; text-indent: 5pt; mso-pagination: widow-orphan; mso-char-indent-count: .5" align="left"><span lang="EN-US" style="font-family: &quot;바탕&quot;,serif; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt; mso-bidi-font-family: 굴림"><span style="mso-spacerun: yes"><font size="2">&nbsp; </font></span><font size="2">Tiger genomes</font></span></p>
+
<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;</span>Whale genomics</span></p>
−
            </td>
+
</td>
−
        </tr>
+
</tr>
−
        <tr style="height: 35.65pt; mso-yfti-irow: 8">
+
<tr>
−
            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 40.8pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none; mso-border-alt: solid black .25pt; mso-border-top-alt: solid black .25pt" width="54">
+
<td style="height: 35.65pt; width: 40.8pt; background-color: transparent">
−
            <p style="word-break: keep-all; text-align: center; margin: 0cm 0cm 0pt; mso-pagination: widow-orphan" align="center"><span lang="EN-US" style="font-family: &quot;Arial Unicode MS&quot;; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt"><font size="2">08</font></span></p>
+
<p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">07</span></span></p>
−
            </td>
+
</td>
−
            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-left-alt: solid black .25pt; mso-border-top-alt: solid black .25pt" width="547">
+
<td style="height: 35.65pt; width: 410.2pt; background-color: transparent">
−
            <p style="margin: 0cm 0cm 0pt; text-indent: 5pt; mso-char-indent-count: .5"><span lang="EN-US" style="font-family: &quot;바탕&quot;,serif; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt; mso-bidi-font-family: 굴림"><span style="mso-spacerun: yes"><font size="2">&nbsp;</font></span></span><span lang="EN-US"><font size="2" face="맑은 고딕">Genome analyses cases</font></span></p>
+
<p><span style="color:black; font-size:12pt">Genome analyses cases</span></p>
−
            <p style="margin: 0cm 0cm 0pt; text-indent: 10pt; mso-char-indent-count: 1.0"><span lang="EN-US" style="font-family: &quot;바탕&quot;,serif; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt; mso-bidi-font-family: 굴림"><span style="mso-spacerun: yes"><font size="2">&nbsp;&nbsp; </font></span><font size="2">Vulture genomes</font></span><span lang="EN-US"><font size="2" face="맑은 고딕">&nbsp;</font></span><span lang="EN-US" style="font-family: &quot;바탕&quot;,serif; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt; mso-bidi-font-family: 굴림"><font size="2">&nbsp;</font></span></p>
+
 
−
            </td>
+
<p style="text-align: left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp; Tiger genomes</span></span></p>
−
        </tr>
+
</td>
−
        <tr style="height: 35.65pt; mso-yfti-irow: 9">
+
</tr>
−
            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 40.8pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none; mso-border-alt: solid black .25pt; mso-border-top-alt: solid black .25pt" width="54">
+
<tr>
−
            <p style="word-break: keep-all; text-align: center; margin: 0cm 0cm 0pt; mso-pagination: widow-orphan" align="center"><span lang="EN-US" style="font-family: &quot;Arial Unicode MS&quot;; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt"><font size="2">09</font></span></p>
+
<td style="height: 35.65pt; width: 40.8pt; background-color: transparent">
−
            </td>
+
<p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">08</span></span></p>
−
            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-left-alt: solid black .25pt; mso-border-top-alt: solid black .25pt" width="547">
+
</td>
−
            <p style="margin: 0cm 0cm 0pt; text-indent: 10pt; mso-char-indent-count: 1.0"><span lang="EN-US" style="font-family: &quot;바탕&quot;,serif; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt; mso-bidi-font-family: 굴림"><span style="mso-spacerun: yes"><font size="2">&nbsp;</font></span></span><span lang="EN-US"><font size="2" face="맑은 고딕">Genome analyses cases (horse transcriptome)</font></span></p>
+
<td style="height: 35.65pt; width: 410.2pt; background-color: transparent">
−
            </td>
+
<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;</span>Genome analyses cases</span></p>
−
        </tr>
+
 
−
        <tr style="height: 35.65pt; mso-yfti-irow: 10">
+
<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;&nbsp; Vulture genomes</span>&nbsp;<span style="color:black; font-family:바탕,serif">&nbsp;</span></span></p>
−
            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 40.8pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none; mso-border-alt: solid black .25pt; mso-border-top-alt: solid black .25pt" width="54">
+
</td>
−
            <p style="word-break: keep-all; text-align: center; margin: 0cm 0cm 0pt; mso-pagination: widow-orphan" align="center"><span lang="EN-US" style="font-family: &quot;Arial Unicode MS&quot;; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt"><font size="2">10</font></span></p>
+
</tr>
−
            </td>
+
<tr>
−
            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-left-alt: solid black .25pt; mso-border-top-alt: solid black .25pt" width="547">
+
<td style="height: 35.65pt; width: 40.8pt; background-color: transparent">
−
            <p style="margin: 0cm 0cm 0pt"><span lang="EN-US"><font size="2" face="맑은 고딕">Curing Cancer using genomics (Oncomics)</font></span></p>
+
<p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">09</span></span></p>
−
            <p style="margin: 0cm 0cm 0pt"><span lang="EN-US"><span style="mso-spacerun: yes"><font size="2" face="맑은 고딕">&nbsp; </font></span><font size="2" face="맑은 고딕">Analysing disease genomes</font></span></p>
+
</td>
−
            </td>
+
<td style="height: 35.65pt; width: 410.2pt; background-color: transparent">
−
        </tr>
+
<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;</span>Genome analyses cases (horse transcriptome)</span></p>
−
        <tr style="height: 35.65pt; mso-yfti-irow: 11">
+
</td>
−
            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 40.8pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none; mso-border-alt: solid black .25pt; mso-border-top-alt: solid black .25pt" width="54">
+
</tr>
−
            <p style="word-break: keep-all; text-align: center; margin: 0cm 0cm 0pt; mso-pagination: widow-orphan" align="center"><span lang="EN-US" style="font-family: &quot;Arial Unicode MS&quot;; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt"><font size="2">11</font></span></p>
+
<tr>
−
            </td>
+
<td style="height: 35.65pt; width: 40.8pt; background-color: transparent">
−
            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-left-alt: solid black .25pt; mso-border-top-alt: solid black .25pt" width="547">
+
<p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">10</span></span></p>
−
            <p style="margin: 0cm 0cm 0pt"><span lang="EN-US" style="font-family: &quot;바탕&quot;,serif; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt; mso-bidi-font-family: 굴림"><span style="mso-spacerun: yes"><font size="2">&nbsp;</font></span></span><span lang="EN-US"><font size="2" face="맑은 고딕">Curing Cancer using genomics (Oncomics)</font></span></p>
+
</td>
−
            <p style="margin: 0cm 0cm 0pt"><span lang="EN-US"><span style="mso-spacerun: yes"><font size="2" face="맑은 고딕">&nbsp; </font></span><font size="2" face="맑은 고딕">Diffuse type cancer analyses.</font></span></p>
+
<td style="height: 35.65pt; width: 410.2pt; background-color: transparent">
−
            </td>
+
<p><span style="color:black; font-size:12pt">Curing Cancer using genomics (Oncomics)</span></p>
−
        </tr>
+
 
−
        <tr style="height: 35.65pt; mso-yfti-irow: 12">
+
<p><span style="color:black; font-size:12pt">&nbsp; Analysing disease genomes</span></p>
−
            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 40.8pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none; mso-border-alt: solid black .25pt; mso-border-top-alt: solid black .25pt" width="54">
+
</td>
−
            <p style="word-break: keep-all; text-align: center; margin: 0cm 0cm 0pt; mso-pagination: widow-orphan" align="center"><span lang="EN-US" style="font-family: &quot;Arial Unicode MS&quot;; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt"><font size="2">12</font></span></p>
+
</tr>
−
            </td>
+
<tr>
−
            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-left-alt: solid black .25pt; mso-border-top-alt: solid black .25pt" width="547">
+
<td style="height: 35.65pt; width: 40.8pt; background-color: transparent">
−
            <p style="margin: 0cm 0cm 0pt"><span lang="EN-US"><font size="2" face="맑은 고딕">Curing Aging using genomics (Geromics)</font></span></p>
+
<p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">11</span></span></p>
−
            <p style="word-break: keep-all; text-align: left; margin: 0cm 0cm 0pt; text-indent: 5pt; mso-pagination: widow-orphan; mso-char-indent-count: .5" align="left"><span lang="EN-US" style="font-family: &quot;바탕&quot;,serif; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt; mso-bidi-font-family: 굴림"><span style="mso-spacerun: yes"><font size="2">&nbsp;</font></span><font size="2">Measuring aging biologically</font></span></p>
+
</td>
−
            <p style="word-break: keep-all; text-align: left; margin: 0cm 0cm 0pt; text-indent: 5pt; mso-pagination: widow-orphan; mso-char-indent-count: .5" align="left"><span lang="EN-US" style="font-family: &quot;바탕&quot;,serif; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt; mso-bidi-font-family: 굴림"><span style="mso-spacerun: yes"><font size="2">&nbsp;</font></span><font size="2">Telomics</font></span></p>
+
<td style="height: 35.65pt; width: 410.2pt; background-color: transparent">
−
            </td>
+
<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;</span>Curing Cancer using genomics (Oncomics)</span></p>
−
        </tr>
+
 
−
        <tr style="height: 35.65pt; mso-yfti-irow: 13">
+
<p><span style="color:black; font-size:12pt">&nbsp; Diffuse type cancer analyses.</span></p>
−
            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 40.8pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none; mso-border-alt: solid black .25pt; mso-border-top-alt: solid black .25pt" width="54">
+
</td>
−
            <p style="word-break: keep-all; text-align: center; margin: 0cm 0cm 0pt; mso-pagination: widow-orphan" align="center"><span lang="EN-US" style="font-family: &quot;Arial Unicode MS&quot;; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt"><font size="2">13</font></span></p>
+
</tr>
−
            </td>
+
<tr>
−
            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-left-alt: solid black .25pt; mso-border-top-alt: solid black .25pt" width="547">
+
<td style="height: 35.65pt; width: 40.8pt; background-color: transparent">
−
            <p style="margin: 0cm 0cm 0pt"><span lang="EN-US" style="font-family: &quot;바탕&quot;,serif; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt; mso-bidi-font-family: 굴림"><span style="mso-spacerun: yes"><font size="2">&nbsp;</font></span></span><span lang="EN-US"><font size="2" face="맑은 고딕">Curing Aging using genomics (Geromics)</font></span></p>
+
<p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">12</span></span></p>
−
            <p style="word-break: keep-all; text-align: left; margin: 0cm 0cm 0pt; text-indent: 10.2pt; mso-pagination: widow-orphan" align="left"><span lang="EN-US"><font size="2" face="맑은 고딕">Aging related keywords and genes</font></span></p>
+
</td>
−
            </td>
+
<td style="height: 35.65pt; width: 410.2pt; background-color: transparent">
−
        </tr>
+
<p><span style="color:black; font-size:12pt">Curing Aging using genomics (Geromics)</span></p>
−
        <tr style="height: 35.65pt; mso-yfti-irow: 14">
+
 
−
            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 40.8pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none; mso-border-alt: solid black .25pt; mso-border-top-alt: solid black .25pt" width="54">
+
<p style="text-align: left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;[[Measuring aging biologically]]</span></span></p>
−
            <p style="word-break: keep-all; text-align: center; margin: 0cm 0cm 0pt; mso-pagination: widow-orphan" align="center"><span lang="EN-US" style="font-family: &quot;Arial Unicode MS&quot;; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt"><font size="2">14</font></span></p>
+
 
−
            </td>
+
<p style="text-align: left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;[[Telomics]]</span></span></p>
−
            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-left-alt: solid black .25pt; mso-border-top-alt: solid black .25pt" width="547">
+
</td>
−
            <p style="word-break: keep-all; text-align: left; margin: 0cm 0cm 0pt; mso-pagination: widow-orphan" align="left"><span lang="EN-US" style="font-family: &quot;바탕&quot;,serif; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt; mso-bidi-font-family: 굴림"><span style="mso-spacerun: yes"><font size="2">&nbsp;</font></span><font size="2">Research Report presentation (Students presentation)</font></span></p>
+
</tr>
−
            </td>
+
<tr>
−
        </tr>
+
<td style="height: 35.65pt; width: 40.8pt; background-color: transparent">
−
        <tr style="height: 35.65pt; mso-yfti-irow: 15; mso-yfti-lastrow: yes">
+
<p style="text-align: center"><span style="color:black; font-size:12pt"><span style="color:black; font-family:arial unicode ms">13</span></span></p>
−
            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 40.8pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none; mso-border-alt: solid black .25pt; mso-border-top-alt: solid black .25pt" width="54">
+
</td>
−
            <p style="word-break: keep-all; text-align: center; margin: 0cm 0cm 0pt; mso-pagination: widow-orphan" align="center"><span lang="EN-US" style="font-family: &quot;Arial Unicode MS&quot;; color: black; mso-font-kerning: 0pt; mso-bidi-font-size: 10.0pt"><font size="2">15</font></span></p>
+
<td style="height: 35.65pt; width: 410.2pt; background-color: transparent">
−
            </td>
+
<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;</span>Curing Aging using genomics (Geromics)</span></p>
−
            <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-left-alt: solid black .25pt; mso-border-top-alt: solid black .25pt" width="547">
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<p style="text-align: left"><span style="color:black; font-size:12pt">Aging related keywords and genes</span></p>
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<p style="text-align: left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;Research Report presentation (Students presentation)</span></span></p>
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<p style="text-align: left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;Research Report presentation</span></span></p>
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Revision as of 16:22, 1 December 2015

Jong Bhak's Genomics course syllabus.

Weekly Schedule

Week

Contents

01

 What is life, information, and the universe?  (as information processing objects)

Introduction to the course.

02

What is Sequencing in Genomics and Omics? (as an approach of understanding life)

Sequencing
 

03

What is alignment, assembly, functional annotation for 'Big data' processing in biology?

Open source tools, concepts of alignment of DNA sequences.
 

04

How molecules and cells propagate in the universe? Evolution.

Close species Comparative Genomics (CSCG) for diverse genome evolution.

Phylogenetic tree.

Evolution

05

Human genomes

   KPGP, KOREF, The first Korean genome

 

06

Genome analyses cases

 Whale genomics

07

Genome analyses cases

  Tiger genomes

08

 Genome analyses cases

   Vulture genomes  

09

 Genome analyses cases (horse transcriptome)

10

Curing Cancer using genomics (Oncomics)

  Analysing disease genomes

11

 Curing Cancer using genomics (Oncomics)

  Diffuse type cancer analyses.

12

Curing Aging using genomics (Geromics)

 Measuring aging biologically

 Telomics

13

 Curing Aging using genomics (Geromics)

Aging related keywords and genes

14

 Research Report presentation (Students presentation)

15

 Research Report presentation

 

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