Difference between revisions of "Jong Bhak's Genomics Syllabus"

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<div style="margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all"><b><span style="font-size: 12pt; color: black; line-height: 160%">Jong Bhak's Genomics course syllabus.</span></b></div>
 
<div style="margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all"><b><span style="font-size: 12pt; color: black; line-height: 160%">Jong Bhak's Genomics course syllabus.</span></b></div>
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<div style="margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all"><span style="font-size: 12pt; color: black; line-height: 160%">Weekly Schedule</span></div>
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<p style="margin: 0cm 0cm 0pt; line-height: 160%; word-break: keep-all; mso-pagination: widow-orphan;"><span lang="EN-US" style="font-size:12.0pt;line-height:160%;font-family:&quot;Arial Unicode MS&quot;;&#10;color:black;mso-font-kerning:0pt">Weekly Schedule</span></p>
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             <p style="margin: 0cm 0cm 0pt; text-align: center; line-height: 160%; word-break: keep-all; mso-pagination: widow-orphan;" align="center"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;&#10; line-height:160%;font-family:&quot;Arial Unicode MS&quot;;color:black;mso-font-kerning:&#10;  0pt"><font size="2">Week</font></span></p>
 
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             <div style="text-align: center; margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 160%"><font size="2">Contents</font></span></div>
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             <p style="margin: 0cm 0cm 0pt; text-align: center; line-height: 160%; word-break: keep-all; mso-pagination: widow-orphan;" align="center"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;&#10; line-height:160%;font-family:&quot;Arial Unicode MS&quot;;color:black;mso-font-kerning:&#10;  0pt"><font size="2">Contents</font></span></p>
 
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             <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">01</font></span></div>
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             <p style="margin: 0cm 0cm 0pt; text-align: center; word-break: keep-all; mso-pagination: widow-orphan;" align="center"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;Arial Unicode MS&quot;;&#10; color:black;mso-font-kerning:0pt"><font size="2">01</font></span></p>
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            <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">(4th Sep 2015)</font></span></div>
 
 
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             <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left">&nbsp;</div>
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             <p style="margin: 0cm 0cm 0pt;"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;&#10; font-family:&quot;바탕&quot;,serif;mso-bidi-font-family:굴림;color:black;mso-font-kerning:&#10;  0pt"><span style="mso-spacerun:yes"><font size="2">&nbsp;</font></span></span><span lang="EN-US"><font face="맑은 고딕" size="2">What is  life, information, and the universe?&nbsp; (as information processing  objects)</font></span></p>
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            <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;(Course orientation, [[Self-Critical Scientific Evaluation]]: SCE), Homework, Presentation, and Research</font></span></div>
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             <p style="margin: 0cm 0cm 0pt; text-align: left; text-indent: 5pt; word-break: keep-all; mso-pagination: widow-orphan; mso-char-indent-count: .5;" align="left"><span lang="EN-US"><font face="맑은 고딕" size="2">Introduction to the course.</font></span></p>
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             <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font></span></div>
 
 
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             <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">02</font></span></div>
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             <p style="margin: 0cm 0cm 0pt; text-align: center; word-break: keep-all; mso-pagination: widow-orphan;" align="center"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;Arial Unicode MS&quot;;&#10;  color:black;mso-font-kerning:0pt"><font size="2">02</font></span></p>
 
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             <div style="text-align: left; margin: 0cm 0cm 8pt; text-indent: 5pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;&nbsp; Chemistry and Biochemistry of Genomics</font></span></div>
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             <p style="margin: 0cm 0cm 0pt; text-indent: 10pt; mso-char-indent-count: 1.0;"><span lang="EN-US"><font face="맑은 고딕" size="2">What is Sequencing in Genomics and Omics? (as an approach of   understanding life)</font></span></p>
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             <div style="text-align: left; margin: 0cm 0cm 8pt; text-indent: 5pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp; &nbsp;[[Sequencing]], [[PCR]], </font></span></div>
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             <p style="margin: 0cm 0cm 0pt; text-align: left; text-indent: 5pt; word-break: keep-all; mso-pagination: widow-orphan; mso-char-indent-count: .5;" align="left"><span lang="EN-US"><font face="맑은 고딕" size="2">Sequencing<br style="mso-special-character:&#10; line-break"  />
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            <div style="text-align: left; margin: 0cm 0cm 8pt; text-indent: 5pt; -ms-word-break: keep-all" align="left">&nbsp;</div>
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             <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">03</font></span></div>
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             <p style="margin: 0cm 0cm 0pt; text-align: center; word-break: keep-all; mso-pagination: widow-orphan;" align="center"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;Arial Unicode MS&quot;;&#10;  color:black;mso-font-kerning:0pt"><font size="2">03</font></span></p>
 
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             <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp; &nbsp;What is reference?</font></span></div>
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             <p style="margin: 0cm 0cm 0pt; text-indent: 10pt; mso-char-indent-count: 1.0;"><span lang="EN-US"><font face="맑은 고딕" size="2">What is alignment, assembly, functional annotation for 'Big data' processing  in biology?</font></span></p>
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             <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp; [[Alignment]]</font></span></div>
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             <p style="margin: 0cm 0cm 0pt; text-align: left; text-indent: 25pt; word-break: keep-all; mso-pagination: widow-orphan; mso-char-indent-count: 2.5;" align="left"><span lang="EN-US"><font face="맑은 고딕" size="2">Open source tools, concepts of  alignment of DNA sequences.<br style="mso-special-character:line-break"  />
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             <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">04</font></span></div>
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            <p style="margin: 0cm 0cm 0pt; text-indent: 10pt; mso-char-indent-count: 1.0;"><span lang="EN-US"><font face="맑은 고딕" size="2">How molecules and cells propagate in the universe? Evolution.</font></span></p>
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            <p style="margin: 0cm 0cm 0pt; text-indent: 10pt; mso-char-indent-count: 1.0;"><span lang="EN-US"><font face="맑은 고딕" size="2">Close species Comparative Genomics (CSCG) for diverse genome  evolution.</font></span></p>
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             <p style="margin: 0cm 0cm 0pt; text-indent: 10pt; mso-char-indent-count: 1.0;"><span lang="EN-US"><font face="맑은 고딕" size="2">Phylogenetic tree.</font></span></p>
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            <p style="margin: 0cm 0cm 0pt; text-align: left; word-break: keep-all; mso-pagination: widow-orphan;" align="left"><span lang="EN-US"><font face="맑은 고딕" size="2">Evolution</font></span></p>
 
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             <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">05</font></span></div>
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             <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font><font size="2">What is Information?</font></span></div>
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             <p style="margin: 0cm 0cm 0pt; text-align: left; word-break: keep-all; mso-pagination: widow-orphan;" align="left"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;바탕&quot;,serif;&#10;  mso-bidi-font-family:굴림;color:black;mso-font-kerning:0pt"><font size="2">Human genomes</font></span></p>
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             <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;&nbsp;&nbsp; Informatics</font></span></div>
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             <p style="margin: 0cm 0cm 0pt; text-indent: 10pt; mso-char-indent-count: 1.0;"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;바탕&quot;,serif;&#10;  mso-bidi-font-family:굴림;color:black;mso-font-kerning:0pt"><span style="mso-spacerun:yes"><font size="2">&nbsp;&nbsp; </font></span><font size="2">KPGP, KOREF</font></span><span lang="EN-US"><font face="맑은 고딕" size="2"> </font></span></p>
 
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             <td style="border-width: 0px 1pt 1pt; border-style: none solid solid; border-color: rgb(0, 0, 0) black black; padding: 1.4pt; border-image: none; width: 40.8pt; height: 35.65pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-top-alt: solid black .25pt;" width="54">
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             <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">06</font></span></div>
+
             <p style="margin: 0cm 0cm 0pt; text-align: center; word-break: keep-all; mso-pagination: widow-orphan;" align="center"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;Arial Unicode MS&quot;;&#10;  color:black;mso-font-kerning:0pt"><font size="2">06</font></span></p>
 
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             <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684">
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             <td style="border-width: 0px 1pt 1pt 0px; border-style: none solid solid none; border-color: rgb(0, 0, 0) black black rgb(0, 0, 0); padding: 1.4pt; width: 410.2pt; height: 35.65pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-left-alt: solid black .25pt; mso-border-top-alt: solid black .25pt;" width="547">
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             <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font><font size="2">What is Programming?</font></span></div>
+
             <p style="margin: 0cm 0cm 0pt; text-indent: 10pt; mso-char-indent-count: 1.0;"><span lang="EN-US"><font face="맑은 고딕" size="2">Genome analyses cases</font></span></p>
−
             <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;&nbsp;&nbsp; Perl, Bioperl</font></span>, Algorithm</div>
+
             <p style="margin: 0cm 0cm 0pt; text-indent: 10pt; mso-char-indent-count: 1.0;"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;바탕&quot;,serif;&#10;  mso-bidi-font-family:굴림;color:black;mso-font-kerning:0pt"><span style="mso-spacerun:yes"><font size="2">&nbsp;</font></span></span><span lang="EN-US"><font face="맑은 고딕" size="2">Whale genomics</font></span></p>
 
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             </td>
 
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         <tr style="mso-yfti-irow:7;height:35.65pt">
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             <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 40.8pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="68">
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             <td style="border-width: 0px 1pt 1pt; border-style: none solid solid; border-color: rgb(0, 0, 0) black black; padding: 1.4pt; border-image: none; width: 40.8pt; height: 35.65pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-top-alt: solid black .25pt;" width="54">
−
             <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">07</font></span></div>
+
             <p style="margin: 0cm 0cm 0pt; text-align: center; word-break: keep-all; mso-pagination: widow-orphan;" align="center"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;Arial Unicode MS&quot;;&#10;  color:black;mso-font-kerning:0pt"><font size="2">07</font></span></p>
 
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             <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684">
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             <td style="border-width: 0px 1pt 1pt 0px; border-style: none solid solid none; border-color: rgb(0, 0, 0) black black rgb(0, 0, 0); padding: 1.4pt; width: 410.2pt; height: 35.65pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-left-alt: solid black .25pt; mso-border-top-alt: solid black .25pt;" width="547">
−
             <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font><font size="2">What is Bioinformatics? </font></span></div>
+
             <p style="margin: 0cm 0cm 0pt; text-indent: 5pt; mso-char-indent-count: .5;"><span lang="EN-US"><font face="맑은 고딕" size="2">Genome analyses cases</font></span></p>
−
             <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;&nbsp;&nbsp; Principles of Bioinformatics</font></span></div>
+
             <p style="margin: 0cm 0cm 0pt; text-align: left; text-indent: 5pt; word-break: keep-all; mso-pagination: widow-orphan; mso-char-indent-count: .5;" align="left"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;&#10;  font-family:&quot;바탕&quot;,serif;mso-bidi-font-family:굴림;color:black;mso-font-kerning:&#10; 0pt"><span style="mso-spacerun:yes"><font size="2">&nbsp; </font></span><font size="2">Tiger genomes</font></span></p>
 
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         <tr style="mso-yfti-irow:8;height:35.65pt">
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             <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 40.8pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="68">
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             <td style="border-width: 0px 1pt 1pt; border-style: none solid solid; border-color: rgb(0, 0, 0) black black; padding: 1.4pt; border-image: none; width: 40.8pt; height: 35.65pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-top-alt: solid black .25pt;" width="54">
−
             <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">08</font></span></div>
+
             <p style="margin: 0cm 0cm 0pt; text-align: center; word-break: keep-all; mso-pagination: widow-orphan;" align="center"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;Arial Unicode MS&quot;;&#10;  color:black;mso-font-kerning:0pt"><font size="2">08</font></span></p>
 
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             <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684">
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             <td style="border-width: 0px 1pt 1pt 0px; border-style: none solid solid none; border-color: rgb(0, 0, 0) black black rgb(0, 0, 0); padding: 1.4pt; width: 410.2pt; height: 35.65pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-left-alt: solid black .25pt; mso-border-top-alt: solid black .25pt;" width="547">
−
             <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font><font size="2">What is Omics?</font></span></div>
+
            <p style="margin: 0cm 0cm 0pt; text-indent: 5pt; mso-char-indent-count: .5;"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;바탕&quot;,serif;&#10; mso-bidi-font-family:굴림;color:black;mso-font-kerning:0pt"><span style="mso-spacerun:yes"><font size="2">&nbsp;</font></span></span><span lang="EN-US"><font face="맑은 고딕" size="2">Genome analyses  cases</font></span></p>
−
             <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;&nbsp;&nbsp; Various omics</font></span></div>
+
             <p style="margin: 0cm 0cm 0pt; text-indent: 10pt; mso-char-indent-count: 1.0;"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;바탕&quot;,serif;&#10;  mso-bidi-font-family:굴림;color:black;mso-font-kerning:0pt"><span style="mso-spacerun:yes"><font size="2">&nbsp;&nbsp; </font></span><font size="2">Vulture genomes</font></span><span lang="EN-US"><font face="맑은 고딕" size="2"> &amp;  Whale genomics</font></span></p>
 +
             <p style="margin: 0cm 0cm 0pt; text-align: left; word-break: keep-all; mso-pagination: widow-orphan;" align="left"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;바탕&quot;,serif;&#10;  mso-bidi-font-family:굴림;color:black;mso-font-kerning:0pt"><font size="2">&nbsp;</font></span></p>
 
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         <tr style="mso-yfti-irow:9;height:35.65pt">
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             <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 40.8pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="68">
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             <td style="border-width: 0px 1pt 1pt; border-style: none solid solid; border-color: rgb(0, 0, 0) black black; padding: 1.4pt; border-image: none; width: 40.8pt; height: 35.65pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-top-alt: solid black .25pt;" width="54">
−
             <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">09</font></span></div>
+
             <p style="margin: 0cm 0cm 0pt; text-align: center; word-break: keep-all; mso-pagination: widow-orphan;" align="center"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;Arial Unicode MS&quot;;&#10;  color:black;mso-font-kerning:0pt"><font size="2">09</font></span></p>
 
             </td>
 
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             <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684">
+
             <td style="border-width: 0px 1pt 1pt 0px; border-style: none solid solid none; border-color: rgb(0, 0, 0) black black rgb(0, 0, 0); padding: 1.4pt; width: 410.2pt; height: 35.65pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-left-alt: solid black .25pt; mso-border-top-alt: solid black .25pt;" width="547">
−
             <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font><font size="2">What is Genomics?</font></span></div>
+
             <p style="margin: 0cm 0cm 0pt; text-indent: 10pt; mso-char-indent-count: 1.0;"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;바탕&quot;,serif;&#10;  mso-bidi-font-family:굴림;color:black;mso-font-kerning:0pt"><span style="mso-spacerun:yes"><font size="2">&nbsp;</font></span></span><span lang="EN-US"><font face="맑은 고딕" size="2">Genome analyses  cases (horse transcriptome)</font></span></p>
 
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         </tr>
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         <tr style="mso-yfti-irow:10;height:35.65pt">
−
             <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 40.8pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="68">
+
             <td style="border-width: 0px 1pt 1pt; border-style: none solid solid; border-color: rgb(0, 0, 0) black black; padding: 1.4pt; border-image: none; width: 40.8pt; height: 35.65pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-top-alt: solid black .25pt;" width="54">
−
             <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">10</font></span></div>
+
             <p style="margin: 0cm 0cm 0pt; text-align: center; word-break: keep-all; mso-pagination: widow-orphan;" align="center"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;Arial Unicode MS&quot;;&#10;  color:black;mso-font-kerning:0pt"><font size="2">10</font></span></p>
 
             </td>
 
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−
             <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684">
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             <td style="border-width: 0px 1pt 1pt 0px; border-style: none solid solid none; border-color: rgb(0, 0, 0) black black rgb(0, 0, 0); padding: 1.4pt; width: 410.2pt; height: 35.65pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-left-alt: solid black .25pt; mso-border-top-alt: solid black .25pt;" width="547">
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             <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font><font size="2">What is Evolution?</font></span></div>
+
             <p style="margin: 0cm 0cm 0pt;"><span lang="EN-US"><font face="맑은 고딕" size="2">Curing Cancer using genomics (Oncomics)</font></span></p>
−
             <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;&nbsp;&nbsp;&nbsp; Darwinian evolution</font></span></div>
+
             <p style="margin: 0cm 0cm 0pt;"><span lang="EN-US"><span style="mso-spacerun:yes"><font face="맑은 고딕" size="2">&nbsp;   </font></span><font face="맑은 고딕" size="2">Analysing disease genomes</font></span></p>
 
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         <tr style="mso-yfti-irow:11;height:35.65pt">
−
             <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 40.8pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="68">
+
             <td style="border-width: 0px 1pt 1pt; border-style: none solid solid; border-color: rgb(0, 0, 0) black black; padding: 1.4pt; border-image: none; width: 40.8pt; height: 35.65pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-top-alt: solid black .25pt;" width="54">
−
             <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">11</font></span></div>
+
             <p style="margin: 0cm 0cm 0pt; text-align: center; word-break: keep-all; mso-pagination: widow-orphan;" align="center"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;Arial Unicode MS&quot;;&#10;  color:black;mso-font-kerning:0pt"><font size="2">11</font></span></p>
 
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             <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684">
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             <td style="border-width: 0px 1pt 1pt 0px; border-style: none solid solid none; border-color: rgb(0, 0, 0) black black rgb(0, 0, 0); padding: 1.4pt; width: 410.2pt; height: 35.65pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-left-alt: solid black .25pt; mso-border-top-alt: solid black .25pt;" width="547">
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             <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font><font size="2">What is Sequence?</font></span></div>
+
             <p style="margin: 0cm 0cm 0pt;"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;&#10;  font-family:&quot;바탕&quot;,serif;mso-bidi-font-family:굴림;color:black;mso-font-kerning:&#10;  0pt"><span style="mso-spacerun:yes"><font size="2">&nbsp;</font></span></span><span lang="EN-US"><font face="맑은 고딕" size="2">Curing  Cancer using genomics (Oncomics)</font></span></p>
 +
            <p style="margin: 0cm 0cm 0pt;"><span lang="EN-US"><span style="mso-spacerun:yes"><font face="맑은 고딕" size="2">&nbsp;   </font></span><font face="맑은 고딕" size="2">Diffuse type cancer analyses.</font></span></p>
 
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         <tr style="mso-yfti-irow:12;height:35.65pt">
−
             <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 40.8pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="68">
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             <td style="border-width: 0px 1pt 1pt; border-style: none solid solid; border-color: rgb(0, 0, 0) black black; padding: 1.4pt; border-image: none; width: 40.8pt; height: 35.65pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-top-alt: solid black .25pt;" width="54">
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             <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">12</font></span></div>
+
             <p style="margin: 0cm 0cm 0pt; text-align: center; word-break: keep-all; mso-pagination: widow-orphan;" align="center"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;Arial Unicode MS&quot;;&#10;  color:black;mso-font-kerning:0pt"><font size="2">12</font></span></p>
 
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             <td style="border-width: 0px 1pt 1pt 0px; border-style: none solid solid none; border-color: rgb(0, 0, 0) black black rgb(0, 0, 0); padding: 1.4pt; width: 410.2pt; height: 35.65pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-left-alt: solid black .25pt; mso-border-top-alt: solid black .25pt;" width="547">
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             <div style="text-align: left; margin: 0cm 0cm 8pt; text-indent: 5pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">What is Cancer?</font></span></div>
+
            <p style="margin: 0cm 0cm 0pt;"><span lang="EN-US"><font face="맑은 고딕" size="2">Curing Aging using genomics (Geromics)</font></span></p>
 +
            <p style="margin: 0cm 0cm 0pt; text-align: left; text-indent: 5pt; word-break: keep-all; mso-pagination: widow-orphan; mso-char-indent-count: .5;" align="left"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;&#10; font-family:&quot;바탕&quot;,serif;mso-bidi-font-family:굴림;color:black;mso-font-kerning:&#10; 0pt"><span style="mso-spacerun:yes"><font size="2">&nbsp;</font></span><font size="2">Measuring aging biologically</font></span></p>
 +
             <p style="margin: 0cm 0cm 0pt; text-align: left; text-indent: 5pt; word-break: keep-all; mso-pagination: widow-orphan; mso-char-indent-count: .5;" align="left"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;&#10;  font-family:&quot;바탕&quot;,serif;mso-bidi-font-family:굴림;color:black;mso-font-kerning:&#10; 0pt"><span style="mso-spacerun:yes"><font size="2">&nbsp;</font></span><font size="2">Telomics</font></span></p>
 
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         <tr style="mso-yfti-irow:13;height:35.65pt">
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             <td style="border-width: 0px 1pt 1pt; border-style: none solid solid; border-color: rgb(0, 0, 0) black black; padding: 1.4pt; border-image: none; width: 40.8pt; height: 35.65pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-top-alt: solid black .25pt;" width="54">
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             <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">13</font></span></div>
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             <p style="margin: 0cm 0cm 0pt; text-align: center; word-break: keep-all; mso-pagination: widow-orphan;" align="center"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;Arial Unicode MS&quot;;&#10;  color:black;mso-font-kerning:0pt"><font size="2">13</font></span></p>
 
             </td>
 
             </td>
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             <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684">
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             <td style="border-width: 0px 1pt 1pt 0px; border-style: none solid solid none; border-color: rgb(0, 0, 0) black black rgb(0, 0, 0); padding: 1.4pt; width: 410.2pt; height: 35.65pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-left-alt: solid black .25pt; mso-border-top-alt: solid black .25pt;" width="547">
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             <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font><font size="2">What is Aging?</font></span></div>
+
             <p style="margin: 0cm 0cm 0pt;"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;&#10;  font-family:&quot;바탕&quot;,serif;mso-bidi-font-family:굴림;color:black;mso-font-kerning:&#10; 0pt"><span style="mso-spacerun:yes"><font size="2">&nbsp;</font></span></span><span lang="EN-US"><font face="맑은 고딕" size="2">Curing  Aging using genomics (Geromics)</font></span></p>
−
             <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;&nbsp;&nbsp;&nbsp; Measuring aging</font></span></div>
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             <p style="margin: 0cm 0cm 0pt; text-align: left; text-indent: 10.2pt; word-break: keep-all; mso-pagination: widow-orphan;" align="left"><span lang="EN-US"><font face="맑은 고딕" size="2">Aging related keywords and genes</font></span></p>
 
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         <tr style="mso-yfti-irow:14;height:35.65pt">
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             <td style="border-width: 0px 1pt 1pt; border-style: none solid solid; border-color: rgb(0, 0, 0) black black; padding: 1.4pt; border-image: none; width: 40.8pt; height: 35.65pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-top-alt: solid black .25pt;" width="54">
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             <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">14</font></span></div>
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             <p style="margin: 0cm 0cm 0pt; text-align: center; word-break: keep-all; mso-pagination: widow-orphan;" align="center"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;Arial Unicode MS&quot;;&#10;  color:black;mso-font-kerning:0pt"><font size="2">14</font></span></p>
 
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             <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684">
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             <td style="border-width: 0px 1pt 1pt 0px; border-style: none solid solid none; border-color: rgb(0, 0, 0) black black rgb(0, 0, 0); padding: 1.4pt; width: 410.2pt; height: 35.65pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-left-alt: solid black .25pt; mso-border-top-alt: solid black .25pt;" width="547">
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             <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font><font size="2">Research Report presentation</font></span></div>
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             <p style="margin: 0cm 0cm 0pt; text-align: left; word-break: keep-all; mso-pagination: widow-orphan;" align="left"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;바탕&quot;,serif;&#10;  mso-bidi-font-family:굴림;color:black;mso-font-kerning:0pt"><span style="mso-spacerun:yes"><font size="2">&nbsp;</font></span><font size="2">Research Report presentation (Students  presentation)</font></span></p>
 
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             <td style="border-width: 0px 1pt 1pt; border-style: none solid solid; border-color: rgb(0, 0, 0) black black; padding: 1.4pt; border-image: none; width: 40.8pt; height: 35.65pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-top-alt: solid black .25pt;" width="54">
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             <div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">15</font></span></div>
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             <p style="margin: 0cm 0cm 0pt; text-align: center; word-break: keep-all; mso-pagination: widow-orphan;" align="center"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;Arial Unicode MS&quot;;&#10;  color:black;mso-font-kerning:0pt"><font size="2">15</font></span></p>
 
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             <td style="border-width: 0px 1pt 1pt 0px; border-style: none solid solid none; border-color: rgb(0, 0, 0) black black rgb(0, 0, 0); padding: 1.4pt; width: 410.2pt; height: 35.65pt; background-color: transparent; mso-border-alt: solid black .25pt; mso-border-left-alt: solid black .25pt; mso-border-top-alt: solid black .25pt;" width="547">
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             <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">&nbsp;</font><font size="2">Research Report presentation</font></span></div>
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             <p style="margin: 0cm 0cm 0pt; text-align: left; word-break: keep-all; mso-pagination: widow-orphan;" align="left"><span lang="EN-US" style="mso-bidi-font-size:10.0pt;font-family:&quot;바탕&quot;,serif;&#10;  mso-bidi-font-family:굴림;color:black;mso-font-kerning:0pt"><span style="mso-spacerun:yes"><font size="2">&nbsp;</font></span><font size="2">Research Report presentation</font></span></p>
 
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<div style="margin: 0cm 0cm 8pt"><font size="2">&nbsp;</font></div>
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<p style="margin: 0cm 0cm 0pt; line-height: 160%; word-break: keep-all; mso-pagination: widow-orphan;"><span lang="EN-US"><font face="맑은 고딕" size="2">&nbsp;</font></span></p>
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</span></div>
 
</div>
 
</div>

Revision as of 19:41, 13 September 2015

Jong Bhak's Genomics course syllabus.

Weekly Schedule

Week

Contents

01

 What is life, information, and the universe?  (as information processing objects)

Introduction to the course.

02

What is Sequencing in Genomics and Omics? (as an approach of understanding life)

Sequencing

03

What is alignment, assembly, functional annotation for 'Big data' processing in biology?

Open source tools, concepts of alignment of DNA sequences.

04

How molecules and cells propagate in the universe? Evolution.

Close species Comparative Genomics (CSCG) for diverse genome evolution.

Phylogenetic tree.

Evolution

05

Human genomes

   KPGP, KOREF

06

Genome analyses cases

 Whale genomics

07

Genome analyses cases

  Tiger genomes

08

 Genome analyses cases

   Vulture genomes & Whale genomics

 

09

 Genome analyses cases (horse transcriptome)

10

Curing Cancer using genomics (Oncomics)

  Analysing disease genomes

11

 Curing Cancer using genomics (Oncomics)

  Diffuse type cancer analyses.

12

Curing Aging using genomics (Geromics)

 Measuring aging biologically

 Telomics

13

 Curing Aging using genomics (Geromics)

Aging related keywords and genes

14

 Research Report presentation (Students presentation)

15

 Research Report presentation

 

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