Difference between revisions of "Jong Bhak's Genomics Syllabus"

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<div><div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%"><span style="font-size:24px">'''<span style="color:black">Jong Bhak's Genomics course syllabus. 2021</span>'''</span></div> <div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%"><span style="font-size:24px">'''<span style="color:black">(No mid-term exam)</span>'''</span></div> <div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%"><span style="color:#FF0000"><span style="font-size:24px">'''* This syllabus can be changed any time in any year!'''</span></span></div> <div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%">
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<div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%"><span style="font-size:24px">'''<span style="color:black">Jong Bhak's Genomics course syllabus. 2024 (Spring)</span>'''</span></div> <div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%"><span style="font-size:16px;">'''<span style="color:black">(No mid-term exam)</span>'''</span></div> <div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%">'''<span style="font-size:10pt"><span style="line-height:160%"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="line-height:160%"><span style="font-family:"><span style="color:black">Weekly Schedule</span></span></span></span></span></span></span></span></span>'''</div> <div style="word-break: keep-all; margin: 0cm 0cm 8pt; line-height: 160%">
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'''<span style="font-size:10pt"><span style="line-height:160%"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="line-height:160%"><span style="font-family:"><span style="color:black">Weekly Schedule</span></span></span></span></span></span></span></span></span>'''
 
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">02</span></span></span></span></span></span></span>
 
| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">02</span></span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[What_is_Sequencing_in_Genomics_and_Omics?|What is Sequencing in Genomics and Omics?]]&nbsp;<br/> [[How_we_produce_genomic_big_data?|How we produce genomic big data?]]<br/> [[Sanger_sequencing|Sanger sequencing]]</span></span></span></span></span></span><br/> <span style="font-size:12pt"><span style="background:white"><span style="line-height:18.0pt"><span style="font-family:Gulim,sans-serif"><span style="font-family:"><span style="color:black">[[What_is_a_protein?|What is a protein?]]&nbsp;&nbsp;</span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[What_is_Sequencing_in_Genomics_and_Omics?|What is Sequencing in Genomics and Omics?]]&nbsp;<br/> &nbsp; [https://www.youtube.com/watch?v=m4I7Fy0xxbk</span></span></span></span></span></span>History of Genome Sequencing by Ahmet Sacan]<br/> <br/> <br/> <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:">[[How_we_produce_genomic_big_data?|How we produce genomic big data?]]<br/> [[Sanger_sequencing|Sanger sequencing]]</span></span></span></span></span></span><br/> <span style="font-size:12pt"><span style="background:white"><span style="line-height:18.0pt"><span style="font-family:Gulim,sans-serif"><span style="font-family:"><span style="color:black">[[What_is_a_protein?|What is a protein?]]&nbsp;&nbsp;</span></span></span></span></span></span>
 
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">03</span></span></span></span></span></span></span>
 
| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">03</span></span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">08</span></span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">[[Comparative_Genomics|Comparative Genomics]] (how we can compare life using genomes)</span></span></span></span></span></span>
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| style="border-bottom: 1px solid black; width: 700px; padding: 1px; height: 47px; border-top: none; border-right: 1px solid black; border-left: none;" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">[[Comparative_Genomics|Comparative Genomics]] (how we can compare life using genomes)<br/> &nbsp; *&nbsp;[https://www.youtube.com/watch?v=JvUtiIfddvI Intro of Comparative Genomics by Jong Bhak]</span></span></span></span></span></span>
 
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">09</span></span></span></span></span></span></span>
 
| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">09</span></span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">11</span></span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:">&nbsp;<span style="font-size:12.0pt"><span style="font-family:">[[Korean genome project]]: Who are Koreans?</span></span></span></span></span>
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="word-break:break-all"><span style="font-family:">&nbsp;<span style="font-size:12.0pt"><span style="font-family:">[[Korean_genome_project|Korean genome project]]: Who are Koreans?</span></span></span></span></span>
 
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">12</span></span></span></span></span></span></span>
 
| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">12</span></span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:54px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:1px solid black" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">14</span></span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">[[Cancer_genomes|Cancer genomes]] and [[Genomes_and_aging|Genomes and aging]] (telomere)</span></span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">[[Cancer_genomes|Cancer genomes]] and [[Genomes_and_aging|Genomes and aging]] (telomere, Epigenomic reprogramming)</span></span></span></span></span></span></span>
 
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">Research Report presentation</span></span></span></span></span></span></span>
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| style="border-bottom:1px solid black; width:547px; padding:1px 1px 1px 1px; height:47px; border-top:none; border-right:1px solid black; border-left:none" | <span style="font-size:10pt"><span style="text-autospace:ideograph-numeric ideograph-other"><span style="word-break:normal"><span style="font-family:"><span style="font-size:12.0pt"><span style="font-family:"><span style="color:black">Research Report presentation ([[SELF|SELF]])</span></span></span></span></span></span></span>
 
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Latest revision as of 10:37, 7 March 2024

Jong Bhak's Genomics course syllabus. 2024 (Spring)
(No mid-term exam)
Weekly Schedule
Week Contents: Students are required to click on all the links and listen to the Youtube channels.
01 Introduction to Jong Bhak's genomics course
What is science?
What is life?
What is DNA? What is RNA?
What is transcription and translation?
What is information?
02 What is Sequencing in Genomics and Omics? 
  History of Genome Sequencing by Ahmet Sacan


How we produce genomic big data?
Sanger sequencing
What is a protein?  
03 Next generation sequencing.
Illumina sequencing
Nanoball sequencing
Nanopore sequencing.
04 Epigenomics
Methylation sequencing (Epigenomic sequencing).
05 DNA and sequence alignment.
Dynamic programming
Computers for genomics (Bioinformatics).
Turing machine
06 Genome Assembly. (building genomes)
07 Phylogenetic tree (tree of life): The origin of Korean people using genome data.
08 Comparative Genomics (how we can compare life using genomes)
  * Intro of Comparative Genomics by Jong Bhak
09 Evolution (genome perspective): Is Darwinian evolution correct?
10  The human genome project
11  Korean genome project: Who are Koreans?
12 Whale genome analyses
13  Tiger genome analyses
14 Cancer genomes and Genomes and aging (telomere, Epigenomic reprogramming)
15 Research Report presentation (SELF)

 

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