Difference between revisions of "Jong Bhak's Genomics Syllabus"

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<p style="text-align:center"><span style="font-size:22px"><span style="color:black"><span style="color:black; font-family:arial unicode ms">Contents</span></span></span></p>
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<p><span style="font-size:16px">&nbsp;</span><span style="color:black; font-size:12pt">&nbsp; [[Introduction to Jong Bhak&#39;s&nbsp;genomics&nbsp;course]]</span></p>
 
<p><span style="font-size:16px">&nbsp;</span><span style="color:black; font-size:12pt">&nbsp; [[Introduction to Jong Bhak&#39;s&nbsp;genomics&nbsp;course]]</span></p>
  
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<p><span style="color:black; font-size:12pt">&nbsp;[[What is Sequencing in Genomics and Omics?]] (as an approach of understanding life)</span></p>
 
<p><span style="color:black; font-size:12pt">&nbsp;[[What is Sequencing in Genomics and Omics?]] (as an approach of understanding life)</span></p>
  
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<p style="text-align:left"><span style="color:black; font-size:12pt">&nbsp;[[Sequencing]]: Sanger, NGS, Methyl-seq, ATAC-seq</span><br />
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<p style="text-align: left"><span style="color:black; font-size:12pt">&nbsp;[[Sequencing]]: Sanger, NGS, Methyl-seq, ATAC-seq</span><br />
 
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<p><span style="color:black; font-size:12pt">&nbsp;[[What is alignment?]], [[What is genome assembly?]], </span></p>
 
<p><span style="color:black; font-size:12pt">&nbsp;[[What is alignment?]], [[What is genome assembly?]], </span></p>
  
 
<p><span style="color:black; font-size:12pt">&nbsp; [[What is functional annotation for Big data&nbsp;processing in biology?]]</span></p>
 
<p><span style="color:black; font-size:12pt">&nbsp; [[What is functional annotation for Big data&nbsp;processing in biology?]]</span></p>
  
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<p style="text-align:left"><span style="color:black; font-size:12pt">&nbsp;Open source tools, concepts of alignment of DNA sequences.</span><br />
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<p style="text-align: left"><span style="color:black; font-size:12pt">&nbsp;Open source tools, concepts of alignment of DNA sequences.</span><br />
 
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<p><span style="color:black; font-size:12pt">&nbsp;[[How molecules and cells propagate in the universe?]] Evolution.</span></p>
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<p><span style="color:black; font-size:12pt">&nbsp;[[How molecules and cells propagate in the universe?]] [[Evolution]].</span></p>
  
 
<p><span style="color:black; font-size:12pt">&nbsp;[[Close species Comparative Genomics (CSCG) for diverse genome evolution]].</span></p>
 
<p><span style="color:black; font-size:12pt">&nbsp;[[Close species Comparative Genomics (CSCG) for diverse genome evolution]].</span></p>
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<p><span style="color:black; font-size:12pt">&nbsp;[[Phylogenetic tree]].</span></p>
 
<p><span style="color:black; font-size:12pt">&nbsp;[[Phylogenetic tree]].</span></p>
  
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<p style="text-align:left"><span style="color:black; font-size:12pt">&nbsp;[[Selective sweep]] &nbsp;[[Convergent evolution]]</span></p>
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<p style="text-align: left"><span style="color:black; font-size:12pt">&nbsp;[[Selective sweep]] &nbsp;[[Convergent evolution]]</span></p>
 
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<p style="text-align:center"><span style="font-size:9px"><span style="color:black"><span style="color:black; font-family:arial unicode ms">(2016.10.07)</span></span></span></p>
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<p style="text-align: center"><span style="font-size:9px"><span style="color:black"><span style="color:black; font-family:arial unicode ms">(2016.10.07)</span></span></span></p>
 
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<p style="text-align:left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;<strong>Human genomes</strong></span></span></p>
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<p style="text-align: left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;<strong>Human genomes</strong></span></span></p>
  
 
<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp; &nbsp;[[KPGP]], [[KOREF]], [[The first Korean genome]]</span></span></p>
 
<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp; &nbsp;[[KPGP]], [[KOREF]], [[The first Korean genome]]</span></span></p>
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<p style="text-align:center"><span style="font-size:9px"><span style="color:black"><span style="color:black; font-family:arial unicode ms">(2016.10.08)</span></span></span></p>
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<p style="text-align: center"><span style="font-size:9px"><span style="color:black"><span style="color:black; font-family:arial unicode ms">(2016.10.08)</span></span></span></p>
 
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<p><span style="color:black; font-size:12pt">&nbsp;Genome analyses cases</span></p>
 
<p><span style="color:black; font-size:12pt">&nbsp;Genome analyses cases</span></p>
  
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<p><span style="color:black; font-size:12pt">&nbsp;Genome analyses cases</span></p>
 
<p><span style="color:black; font-size:12pt">&nbsp;Genome analyses cases</span></p>
  
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<p style="text-align:left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp; <strong>Tiger genomes</strong></span></span></p>
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<p style="text-align: left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp; [[<strong>Tiger genomes]]</strong></span></span></p>
 
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<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;</span>Genome analyses cases</span></p>
 
<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;</span>Genome analyses cases</span></p>
  
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<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;&nbsp; Vulture genomes</span>&nbsp;<span style="color:black; font-family:바탕,serif">&nbsp;</span></span></p>
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<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;&nbsp; [[Vulture genomes]]</span>&nbsp;<span style="color:black; font-family:바탕,serif">&nbsp;</span></span></p>
 
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<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;<strong>Transcriptome</strong>: &nbsp;</span>Genome analyses cases (horse transcriptome)</span></p>
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<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;[[<strong>Transcriptome]]</strong>: &nbsp;</span>Genome analyses cases ([[horse transcriptome]])</span></p>
 
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<p><span style="color:black; font-size:12pt">&nbsp;Curing Cancer using genomics (Oncomics)</span></p>
 
<p><span style="color:black; font-size:12pt">&nbsp;Curing Cancer using genomics (Oncomics)</span></p>
  
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<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;</span>Curing Cancer using genomics (Oncomics)</span></p>
 
<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;</span>Curing Cancer using genomics (Oncomics)</span></p>
  
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<p><span style="color:black; font-size:12pt">&nbsp;Curing Aging using genomics (Geromics)</span></p>
 
<p><span style="color:black; font-size:12pt">&nbsp;Curing Aging using genomics (Geromics)</span></p>
  
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<p style="text-align:left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;[[Measuring aging biologically]]</span></span></p>
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<p style="text-align: left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;[[Measuring aging biologically]]</span></span></p>
  
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<p style="text-align:left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;[[Telomics]]</span></span></p>
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<p style="text-align: left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;[[Telomics]]</span></span></p>
  
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<p style="text-align:left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;[[Geromics Lecture related links: telomeres]]</span></span></p>
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<p style="text-align: left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;[[Geromics Lecture related links: telomeres]]</span></span></p>
 
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<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;</span>Curing Aging using genomics (Geromics)</span></p>
 
<p><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;</span>Curing Aging using genomics (Geromics)</span></p>
  
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<p style="text-align:left"><span style="color:black; font-size:12pt">&nbsp; Aging related keywords and genes</span></p>
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<p style="text-align:left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;Epigenomics (Environmental genome)</span></span></p>
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<p style="text-align: left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp;[[Epigenomics]] (Environmental genome)</span></span></p>
 
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<p style="text-align:left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp; Research Report presentation</span></span></p>
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<p style="text-align: left"><span style="color:black; font-size:12pt"><span style="color:black; font-family:바탕,serif">&nbsp; [[Research Report presentation]]</span></span></p>
 
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Revision as of 00:33, 31 October 2017

Jong Bhak's Genomics course syllabus.
(No mid-term exam)

Weekly Schedule

Week

Contents

01

   Introduction to Jong Bhak's genomics course

   What is life?, What is information?, What is the universe?  (as information processing objects)

  What is evolution?

02

 What is Sequencing in Genomics and Omics? (as an approach of understanding life)

 Sequencing: Sanger, NGS, Methyl-seq, ATAC-seq
 

03

 What is alignment?, What is genome assembly?,

  What is functional annotation for Big data processing in biology?

 Open source tools, concepts of alignment of DNA sequences.
 

04

 How molecules and cells propagate in the universe? Evolution.

 Close species Comparative Genomics (CSCG) for diverse genome evolution.

 Phylogenetic tree.

 Selective sweep  Convergent evolution

05

(2016.10.07)

 Human genomes

   KPGP, KOREF, The first Korean genome

 

06

(2016.10.08)

 Genome analyses cases

  Whale genomics

07

 Genome analyses cases

  [[Tiger genomes]]

08

 Genome analyses cases

   Vulture genomes  

09

 [[Transcriptome]]:  Genome analyses cases (horse transcriptome)

10

 Curing Cancer using genomics (Oncomics)

   Analysing disease genomes

11

 Curing Cancer using genomics (Oncomics)

  Diffuse type cancer analyses.

12

 Curing Aging using genomics (Geromics)

 Measuring aging biologically

 Telomics

 Geromics Lecture related links: telomeres

13

 Curing Aging using genomics (Geromics)

  Aging related keywords and genes

14

 Epigenomics (Environmental genome)

15

  Research Report presentation

 

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