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Bioprogramming

1,003 bytes added, 02:11, 4 December 2015

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<h1><~~b>Bioinformatics</~~span></b~~strong></h1> In bioinformatics, all biological data are regarded as information. So, by combining various fields such as computer science and statistics, the information is analyzed and studied.~~~~ <~~b> </~~span></b~~strong> <h1><strong~~>Bioprogramming~~~~</h1> <bstrong>Bioprogramming </~~span></b~~strong>is all programming~~~~ activities for analyzing biological data.~~~~ <~~b> </~~span></b~~strong> <h2><~~b>Programming</~~span></b~~strong></h2> <bstrong>Programming </~~span></b~~strong>is a process that makes new algorithm from programming languages called codes through a compiler. It can convert a set of programming languages into executable programs. Programs can perform various activities like computation, analysis, algorithmic flow, and more. ~~~~ The <bstrong>computer </bstrong>is the electrical machine or device that carries out the programs. Computers exist in many different forms such as desktop, laptop, tablet, and etc. ~~ ~~ <~~b> </~~span></b~~strong> <h3 style="margin-left: 40px"><~~b>Compiler</~~span></b~~strong></h3> <bstrong>Compiler </~~span></b~~strong>is a program that transforms programming languages into computer languages. With this process, computer can recognize the commands. The compilers have own specific programming language. C++, for example, has c language. They are classified according to the languages and the operating systems.~~ <h3 style="margin-left: 40px">Programming language</h3>~~Programming languages are generally high-level languages that are used in coding by programmers.If you compare the programming to a country, then the language is the communication medium. The 3 major types of bioprogramming languages are S, R, and Matlab. All of them are for statistical and computational use. Grammar is the rule of the languages. ~~ <h2>Perl programming</h2>~~Perl is a programming language that supports scripts called a script lanuguage. It is developed by Larry wall in 1987. It is a powerful tool for varied applications such as network programming, finance, and bioinformatics. An operating system of perl is basically Linux but almost systems support the program. ~~<a href="http://perl.org">site(perl.org)</a> ~~~~<h3 style="margin-left: 40px">BioPerl programming</h3>~~BioPerl is a collection of Perl modules for biological data processing. It is an open source software for biological applications in bioinformatics. In the Human Genome Project, the program has played a central role.~~<a href="http://bioperl.org">site(bioperl.org)</a> <h2>BioOS</h2>BioOS denotes an operationg system for bioinformatics<a href="http://bioos.org">site(bioos.org) </a>

<h3 style="margin-left:40px">Programming language</h3> Programming languages are generally high-level languages that are used in coding by programmers.If you compare the programming to a country, then the language is the communication medium. The 3 major types of bioprogramming languages are S, R, and Matlab. All of them are for statistical and computational use. Grammar is the rule of the languages.   <h2>Perl programming</h2> Perl is a programming language that supports scripts called a script lanuguage. It is developed by Larry wall in 1987. It is a powerful tool for varied applications such as network programming, finance, and bioinformatics. An operating system of perl is basically Linux but almost systems support the program.  <a href="http://perl.org">site(perl.org)</a>   <h3 style="margin-left:40px">BioPerl programming</h3> BioPerl is a collection of Perl modules for biological data processing. It is an open source software for biological applications in bioinformatics. In the Human Genome Project, the program has played a central role. <a href="http://bioperl.org">site(bioperl.org)</a> Homework source:  #!/usr/bin/perl use strict; use warnings; use Path::Class; use autodie; # die if problem reading or writing a file my $dir = dir("C:/Temp"); # C:/Temp print "The Fasta File will be generated in C:/Temp\n"; print "The name of file is FASTA20131369.txt.\n"; my $file = $dir->file("file.txt"); # C:/Temp/FASTA20131369.txt # Get a file_handle (IO::File object) you can write to my $file_handle = $file->openw(); my @list = ('>Your_first_seq', 'ATATATATATATATATAATATATATATATATATAATATATATATATATATAATATATATATATATATA ATATATATATATATATAATATATATATATATATAATATATATATATATATAATATATATATATATATA ATATATATATATATATAATATATATATATATATAATATATATATATATATAATATATATATATATATA ATATATATATATATATAATATATATATATATATAATATATATATATATATAATATATATATATATATA'); foreach my $line ( @list ) {     # Add the line to the file     $file_handle->print($line . "\n"); } <h2>BioOS</h2> BioOS denotes an operationg system for bioinformatics <a href="http://bioos.org">site(bioos.org) </a>   <h2>Other languages for Bioinformatics</h2>

<ul>

<li><a href="http://en.wikipedia.org/wiki/R_(programming_language)">R</a></li> <li><a href="http://en.wikipedia.org/wiki/S_(programming_language)">S</a></li> <li><a href="http://en.wikipedia.org/wiki/MATLAB">Matlab</a></li>

</ul>

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Perl tutorial:  http://raven.iab.alaska.edu/~ntakebay/teaching/programming/perl1st/index.html

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imported>Jeongmin Oh

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