Difference between revisions of "Myungseo Yoon"
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<a href="http://scop.mrc-lmb.cam.ac.uk/scop/">SCOP: Structural Classification of Proteins</a><br /> | <a href="http://scop.mrc-lmb.cam.ac.uk/scop/">SCOP: Structural Classification of Proteins</a><br /> | ||
<a href="http://www.incodom.kr/Motif">Motif, Domain, and Tools for searching these.</a><br /> | <a href="http://www.incodom.kr/Motif">Motif, Domain, and Tools for searching these.</a><br /> | ||
| + | <a href="http://www.exemwiki.com/?p=4361">Statistics: Basics of statistical analysis (Korean)</a><br /> | ||
| + | <a href="http://math7.tistory.com/55">Statistics: T-distribution (Korean)</a><br /> | ||
| + | Bayesian Probability <a href="http://darkpgmr.tistory.com/119">1</a> <a href="http://ddiri01.tistory.com/234">2</a> <a href="https://ko.wikipedia.org/wiki/%EB%B2%A0%EC%9D%B4%EC%A6%88_%ED%99%95%EB%A5%A0%EB%A1%A0">3</a><br /> | ||
| + | <a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3154645/">PSMC (Pairwise Sequentially Markovian Coalescent) analysis</a> <br /> | ||
| + | <a href="https://haroldpimentel.wordpress.com/2014/05/08/what-the-fpkm-a-review-rna-seq-expression-units/">What the FPKM? A review of RNA-Seq expression units</a><br /> | ||
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Paper Links<br /> | Paper Links<br /> | ||
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Latest revision as of 23:08, 22 September 2016
This is Myungseo's Yoon.
E-mail address : porori3000@naver.com
Contents
External Links to study Bioinformatics
Next Generation Sequencing (NGS) - Introduction document (Illumina)
FASTQ format : a text-based format for storing both a biological sequence (usually nucleotide sequence) and its corresponding quality scores.
FASTA format : a text-based format for representing either nucleotide sequences or peptide sequences, in which nucleotides or amino acids are represented using single-letter codes.
SAMtools : a set of utilities for interacting with and post-processing short DNA sequence read alignments.
KEGG: Kyoto Encyclopedia of Genes and Genomes
KAAS: KEGG Automatic Annotation Server - Help
dN/dS ratio
TimeTree :: a public resource for knowledge on the timescale and evolutionary history of life. Search the database below or go to the TIMETREE OF LIFE for other resources.
SCOP: Structural Classification of Proteins
Motif, Domain, and Tools for searching these.
Statistics: Basics of statistical analysis (Korean)
Statistics: T-distribution (Korean)
Bayesian Probability 1 2 3
PSMC (Pairwise Sequentially Markovian Coalescent) analysis
What the FPKM? A review of RNA-Seq expression units
Paper Links
Research contained Domain Expansion/Contraction Analysis
A Tool Introduction "CAFE: a computational tool for the study of gene family evolution"
...
External Links to study Programming (Perl)
Perl Basics(Korean)
How to sort array of mixed strings (string+number) by number(Korean)
File handle, directory working and globbing
Regular expression
Convert between scientific and decimal notation
...
Homeworks
YMS_HW1 : Make a Perl program translating 'all' combinations of triple bases into amino acids.
YMS_HW2 : What is the most important thing in your life? (20 words)
YMS_HW3 : Write an essay about the news article.
YMS_HW4 : Write an essay about the news article.
Project candidates
1. About Genomic Features of Asperger Syndrome.
Asperger syndrome (AS), also known as Aspergers, is a developmental disorder characterized by significant difficulties in social interaction and nonverbal communication, along with restricted and repetitive patterns of behavior and interests.
Related contents ...
Paper: A Pooled Genome-Wide Association Study of Asperger Syndrome
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