Difference between revisions of "Essay !10 - By using Drosophlia melanogaster protein sequence, Finding the human orthologue candidates and variants of w, sc, cdk1 Code : KSI0022"
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| − | <p style="text-align: center | + | <p style="text-align:center"><span style="font-size:36px"><Genomics Essay #10 – Genome browser></span></p> |
<p> </p> | <p> </p> | ||
| − | <p style="text-align: right | + | <p style="text-align:right"><strong>UNIST BIO - 20141110 Sangin Kim</strong></p> |
<p> </p> | <p> </p> | ||
| − | <p style="text-align: center | + | <p style="text-align:center"><span style="color:#008000"><strong><span style="font-size:28px">White (w)</span></strong></span></p> |
<p><strong>Drosophila melanogaster protein sequence of White (w)</strong></p> | <p><strong>Drosophila melanogaster protein sequence of White (w)</strong></p> | ||
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| − | <p style="text-align: center | + | <p style="text-align:center"><span style="color:#008000"><strong><span style="font-size:28px">Scalloped (sc)</span></strong></span></p> |
<p><strong>Drosophila melanogaster protein sequence of Scalloped (sc)</strong></p> | <p><strong>Drosophila melanogaster protein sequence of Scalloped (sc)</strong></p> | ||
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<p> </p> | <p> </p> | ||
| − | <p style="text-align: center | + | <p style="text-align:center"><span style="color:#008000"><span style="font-size:28px"><strong>Cdk1</strong></span></span></p> |
<p><strong>Drosophila melanogaster protein sequence of Cdk1</strong></p> | <p><strong>Drosophila melanogaster protein sequence of Cdk1</strong></p> | ||
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<p> </p> | <p> </p> | ||
| − | <p style="text-align: right | + | <p style="text-align:right">2016.10.14.Fri</p> |
| − | <p style="text-align: right | + | <p style="text-align:right">UNIST BIO Junior 20141110 Sangin Kim</p> |
Latest revision as of 16:02, 9 November 2016
<Genomics Essay #10 – Genome browser>
UNIST BIO - 20141110 Sangin Kim
White (w)
Drosophila melanogaster protein sequence of White (w)
>sp|P10090|WHITE_DROME Protein white OS=Drosophila melanogaster GN=w PE=2 SV=2
MGQEDQELLIRGGSKHPSAEHLNNGDSGAASQSCINQGFGQAKNYGTLLPPSPPEDSGSG
SGQLAENLTYAWHNMDIFGAVNQPGSGWRQLVNRTRGLFCNERHIPAPRKHLLKNVCGVA
YPGELLAVMGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVDAKEMQARCAYVQQ
DDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIGVPGRVKG
LSGGERKRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQKGKTVILTIHQP
SSELFELFDKILLMAEGRVAFLGTPSEAVDFFSYVGAQCPTNYNPADFYVQVLAVVPGRE
IESRDRIAKICDNFAISKVARDMEQLLATKNLEKPLEQPENGYTYKATWFMQFRAVLWRS
WLSVLKEPLLVKVRLIQTTMVAILIGLIFLGQQLTQVGVMNINGAIFLFLTNMTFQNVFA
TINVFTSELPVFMREARSRLYRCDTYFLGKTIAELPLFLTVPLVFTAIAYPMIGLRAGVL
HFFNCLALVTLVANVSTSFGYLISCASSSTSMALSVGPPVIIPFLLFGGFFLNSGSVPVY
LKWLSYLSWFRYANEGLLINQWADVEPGEISCTSSNTTCPSSGKVILETLNFSAADLPLD
YVGLAILIVSFRVLAYLALRLRARRKE
Human orthologue candidates and comparing (w)
Many-to-many ortholog
Selected one of the human orthologue candidate and variants (w)
(1) Missense variants - 10718
(2) Synonymous variants - 6883
(3) Intronic variants - 248025
Scalloped (sc)
Drosophila melanogaster protein sequence of Scalloped (sc)
>sp|P30052|SCAL_DROME Protein scalloped OS=Drosophila melanogaster GN=sd PE=1 SV=1
MKNITSSSTCSTGLLQLQNNLSCSELEVAEKTEQQAVGPGTIPSPWTPVNAGPPGALGSA
DTNGSMVDSKNLDVGDMSDDEKDLSSADAEGVWSPDIEQSFQEALSIYPPCGRRKIILSD
EGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLREIQAKIKVQFWQPGLQPST
SQDFYDYSIKPFPQPPYPAGKTSTAVSGDETGIPPSQLPWEGRAIATHKFRLLEFTAFME
IQRDEIYHRHLFVQLGGKPSFSDPLLETVDIRQIFDKFPEKSGGLKDLYEKGPQNAFYLV
KCWADLNTDLTTGSETGDFYGVTSQYESNENVVLVCSTIVCSFGKQVVEKVESEYSRLEN
NRYVYRIQRSPMCEYMINFIQKLKNLPERYMMNSVLENFTILQVMRARETQETLLCIAYV
FEVAAQNSGTTHHIYRLIKE
Human orthologue candidates and comparing (sc)
1-to-many ortholog
Selected one of the human orthologue candidate and variants (sc)
(1) Missense variants - 3527
(2) Synonymous variants - 2175
(3) Intronic variants - 145182
Cdk1
Drosophila melanogaster protein sequence of Cdk1
>sp|P23572|CDK1_DROME Cyclin-dependent kinase 1 OS=Drosophila melanogaster GN=Cdk1 PE=1 SV=1
MEDFEKIEKIGEGTYGVVYKGRNRLTGQIVAMKKIRLESDDEGVPSTAIREISLLKELKH
ENIVCLEDVLMEENRIYLIFEFLSMDLKKYMDSLPVDKHMESELVRSYLYQITSAILFCH
RRRVLHRDLKPQNLLIDKSGLIKVADFGLGRSFGIPVRIYTHEIVTLWYRAPEVLLGSPR
YSCPVDIWSIGCIFAEMATRKPLFQGDSEIDQLFRMFRILKTPTEDIWPGVTSLPDYKNT
FPCWSTNQLTNQLKNLDANGIDLIQKMLIYDPVHRISAKDILEHPYFNGFQSGLVRN
Human orthologue candidates and comparing (Cdk1)
1 – to – 1 ortholog
Selected one of the human orthologue candidate and variants (Cdk1)
(1) Missense variants - 1354
(2) Synonymous variants - 958
(3) Intronic variants - 29424
2016.10.14.Fri
UNIST BIO Junior 20141110 Sangin Kim
