DNA sequencing Alignment

From Biolecture.org

Sequencing Methods

Alignment Methods

My own code for Alignment by MATLAB

 

References:

F. SANGER, S. NICKLEN, AND A. R. COULSON. DNA sequencing with chain-terminating inhibitors. Medical Research Council Laboratory of Molecular Biology, Cambridge (1977)

Shawn E. Levy and Richard M. Myers - Advancements in Next-Generation Sequencing (2016)

Shyi.M.C., Chung.H.L., and Shi.J.C. Multiple DNA Sequence Alignment Based on Genetic Algorithms and Divide-and-Conquer Techniques. International Journal of Applied Science and Engineering. 3, 2: 89-100 (2005)

David W. Mount, Bioinformatics – Sequence and Genome Analysis, Cold Spring Harbor Laboratory Press

https://www.youtube.com/watch?v=FvHRio1yyhQ - Sanger sequencing

https://www.youtube.com/watch?v=uQq37JL618Q - Shotgun sequencing

https://www.youtube.com/watch?v=fCd6B5HRaZ8&t=66s - illumina dye sequencing

https://www.youtube.com/watch?v=GUb1TZvMWsw - Nanopore sequencing

https://en.wikipedia.org