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20170519 class lecture note

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<p>II. Bioprogramming.</p>
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<p style="margin-left: 40px;">- In point of second definition, Jong said Bioprogramming is quite <u>different with IT programming</u> because bioprogramming is dealing with biological data to define the &quot;rules&quot; of nature. However the IT programming may just&nbsp;handle&nbsp;and consider the data from human beings such as bank data or Big data. That means we need to keep well&nbsp;biological knowledges if we&#39;d like to do the bioprogramming.</p>
<p style="margin-left: 40px;">+) I&#39;m very impressed with the phrase, &quot;natural process of information propagation&quot;. At the first, it&#39;s hard to understand the meaning of information propagation, but after thinking and understanding little, it&#39;s amazing. If the lives are just some information&#39;s relationships and complicated programmings, the most basal instinct might be able to be an &#39;information propagation&#39;. Of course, I cannot understand and expect how to explain the consciousness and emotions, but it&#39;s engouh enough to be impressed. I will talk more about this topic in my essay.</p>
<pstyle="margin-left:40px">&nbsp;- Jong said, Bioinformatics are hacking a circuit of life based on the protein or other biological data like genomics, and analyzing it.</p>
<pstyle="margin-left: 40px;">editting now- In point of the second definition again, there are several important things we need to achive.&nbsp;</p> <ol> <li style="margin-left: 40px;">Guru level coding.</li> <li style="margin-left: 40px;">Understanding computer hardware.</li> <li style="margin-left: 40px;">Parsing ability. (text manipulation; finding and applying rules.)</li> <li style="margin-left: 40px;">Database. ( MySQL; an effective program taking and dealing with test and huge data.)</li></ol> <hr /><p>III. Grammar and Compiler</p> <p>&gt; We also discuss the grammar ( or rules ) and compiler ( translater ).</p> <p style="margin-left: 40px;">- First, there are several languages for computer.The basic and first one is machine code, which is recognized by computers, and expressed by 0 and 1. The next steps of codes&#39; development are assembly code, C code, basic easy program languages and Perl, in order.</p> <p style="margin-left: 40px;">- Actually it&#39;s almost impossible to write the machine code by human hands, so we use the &#39;compilers&#39;, translaters converting source codes ( for example, the Perl. ) to binary code ( which computer can recognize and execute. ).</p> <p style="margin-left: 40px;">- Then, What is the &#39;grammar&#39; in bioprogramming? Saying easily, that is the common &#39;rule&#39;. To explain this concept, Jong took the Avram Noam Chomsky&#39;s linguistic structures and rules, and expanding that, he said some rules do&nbsp;also exist in programming as the source codes are a kind&nbsp;of languages.</p> <p style="margin-left: 40px;">- Compilers have the rules*&nbsp;for translating source codes to binary forms and understanding the rules are most important point. Expanding that thoughts, if it&#39;s possible to understand the rules or grammars of life, we can understatnd and know&nbsp;the &#39;life&#39;&nbsp;when we&#39;ve done.</p> <p>End.</p>
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