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<td><a href="ftp://ftp.ncbi.nlm.nih.gov/blast/">BLAST at NCBI</a></td>
<td> Blast open source [[public domain]] softwareserved by NCBI of USA.</td>
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<td><a href="http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml">Cn3D</a></td>
<td> Application that allows to view 3D structures, at NCBI, NIH, USA.</td>
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<td valign="top"><a href="http://www.clcbio.com/index.php?area=software&section=free">CLC Bio</a><br /> </td> <td valign="top"> Basic bioinformatics analyses and data management - free download<br /> </td>
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<td><font color="#000000"><a href="http://compbio.ornl.gov/structure/domainparser/">DomainParser</a></font></td>
<td><font color="#000000"> A protein domain partition program</font></td>
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<td><a href="http://www.emboss.org/">EMBOSS</a></td>
<td> EMBOSS is a package of FREE free open source software for sequence analysisbioinformatic analyses</td>
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<td><a href="http://www.e-cell.org/">E-cell</a></td>
<td> Simulating intracellular molecular processes of living cells project</td>
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<td><a href="http://www.extropia.com/applications.html">eXtropia</a></td>
<td> Several free web tools</td>
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<td><a href="ftp://ftp.virginia.edu/pub/fasta/">Fasta</a></td>
<td> Open source for Fasta</td>
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<td><a href="http://genamics.com/software/"><font color="#810081">Genamics</font></a></td>
<td> Gen<font color="#ff0000">a</font>mics SoftwareSeek is a respository and database of freely-distributable and commercial tools for use in molecular biology and biochemistry</td>
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<td><a target="new" href="http://www.psc.edu/biomed/genedoc/"><font color="#810081">GeneDoc</font></a></td>
<td><font color="#000000"> Multiple sequence alignment editor, analyzer & shading utility for windows</font></td>
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<td><a href="http://genesis.bbb.caltech.edu/GENESIS/genesis.html">Genesis</a></td>
<td> Information about GEneral NEural SImulation System</td>
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<td><a href="http://globin.cse.psu.edu/">Globin</a></td>
<td> Several free tools</td>
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<td><a href="http://www.gnu.org/">GNU</a></td>
<td> Free software foundation - several opensource programming toolsfor free OS such as [[LINUX]].</td>
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<td><a href="http://hmmer.wustl.edu/">HMMER</a></td>
<td> HMMER 2.2 Profile hidden : Hidden Markov models for biological sequence analysisby Sean Eddy. </td>
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<td><a href="http://rsb.info.nih.gov/nih-image/">NIH Image</a></td>
<td> Image analysis program for Macintosh from NIH</td>
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<td><font color="#000000"><a target="new" href="http://www.gsf.de/biodv/matinspector.html">MatInspector</a></font></td>
<td><font color="#000000"> Detection of transcription factor binding sites</font></td>
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<td><a href="http://www.scriptarchive.com/">Matt's Script Archive</a></td>
<td> Several free Perl scripts</td>
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<td><a href="http://www.mbshortcuts.com/software/index.htm">MB Shotcuts</a></td>
<td> List of several free molecular biology softwares</td>
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<td><a href="http://www.arc.unm.edu/~aroberts/main/free.htm"><font color="#810081">MolBio Links</font></a></td>
<td> Links to several molecular biology toos</td>
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<td><font color="#000000"><a href="http://iubio.bio.indiana.edu/IUBio-Software+Data/molbio/Listings.html">Molecular Biology</a></font></td>
<td> List of many free software package for Mac and PC</td>
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<td><font color="#000000"><a href="http://theory.lcs.mit.edu/~elwolf/multicoil.html">Multicoil</a></font></td>
<td><font color="#000000"> Program to p</font>redict coiled coil regions in proteins</td>
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<td style="VERTICAL-ALIGN: top"><a href="http://www.drive5.com/muscle/">MUSCLE</a><br /> </td> <td style="VERTICAL-ALIGN: top"> Protein Multiple Sequence Alignment Software<br /> </td>
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<td valign="top"><a href="http://www.softgenetics.com/">MutationSurveyor</a><a href="http://www.softgenetics.com/"> & MutationExplorer</a></td>
<td valign="top"> Analysis of DNA variants, SNPs and mutations<br /> </td>
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<td><a href="http://www.openinformatics.org/">Open Informatics</a></td>
<td> Open source softwares</td>
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<td><a href="http://www.phrap.org/">Phred, Phrap & Consed</a></td>
<td> Sequence quality and assembly softwares</td>
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<td style="VERTICAL-ALIGN: top"><a href="http://chum.gs.washington.edu/PolyPhred.html">PolyPhred</a><br /> </td> <td style="VERTICAL-ALIGN: top"> Compares traces to identify heterozygous sites for SNPs</td>
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<td valign="top"><a href="http://physionet.org/">PhysioNet</a><br /> </td> <td valign="top"> Collection of physiologic simulation software<br /> </td>
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<td><font color="#000000"><a href="http://www.chemicalgraphics.com/">PovChem</a></font></td>
<td><font color="#000000"> Visualization program for PDB protein structures</font></td>
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<td><a href="http://www.hgmp.mrc.ac.uk/CCP11/code_libraries.txt.html#21">Programming Libraries</a></td>
<td> Bioinformatics Programming Libraries, links to lots of sites and source codes</td>
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<td><font color="#000000"><a target="new" href="http://compbio.ornl.gov/structure/prospect/">Prospect</a></font></td>
<td><font color="#000000"> A threading-based protein structure prediction system</font></td>
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<td><a href="http://lib.stat.cmu.edu/R/CRAN/">R - statistical package</a></td>
<td> Statistical computing and graphics software</td>
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<td><a href="http://sourceforge.net/softwaremap/trove_list.php?form_cat=252">SourceForge.net</a></td>
<td> Several ready to use tool</td>
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<td><a href="http://www.mrc-lmb.cam.ac.uk/pubseq/">Staden Package</a></td>
<td> A excellent package for sequence analysis and assembly</td>
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<td><a href="http://www.ualberta.ca/~stothard/javascript/d_load.html">Sequence Manipulation</a></td>
<td> Free suite of sequence manipulation tools</td>
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<td><a href="http://blast.wustl.edu/">WU-BLAST</a> </td> <td> Washington university University BLAST archives</td>
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