HW1 - Predicting Protein Structure

Submitted Sequence in FASTA format   >protein MRLPAQLLGLLMLWVPGSSGDVVMTQSPLSLPVTLGQPASISCRSSQSLVHSDGNTYLNW FQQRPGQSPRRLIYRVSNRDSGVPDRFSGSGSGTDFTLKISRVEAEDVGLYYCMQHTHWS PITFGQGTRLEIKR

Predicted Secondary Structure   Sequence                   20                  40                  60                  80                 100                 120                    |                   |                   |                   |                   |                   |               MRLPAQLLGLLMLWVPGSSGDVVMTQSPLSLPVTLGQPASISCRSSQSLVHSDGNTYLNWFQQRPGQSPRRLIYRVSNRDSGVPDRFSGSGSGTDFTLKISRVEAEDVGLYYCMQHTHWSPITFGQGTRLEIKR Prediction CCCHHHHHHHHHHHCCCCCCCSSSSCCCCCSSSCCCCCSSSSSSCCCCCCCCCCCCSSSSSCCCCCCCCSSSSSCCCCCCCCCCCCCCCCCCCCCSSSSSCCCCHHHCSSSSSSCCCCCCCCCCCCCCSSSSCC Conf.Score 97258999999841689971077853187254489998898886787623578983578751398999707666143136889988232665887778888989758989865216999995237974875779   H:Helix; S:Strand; C:Coil

Predicted Solvent Accessibility   Sequence                   20                  40                  60                  80                 100                 120                    |                   |                   |                   |                   |                   |               MRLPAQLLGLLMLWVPGSSGDVVMTQSPLSLPVTLGQPASISCRSSQSLVHSDGNTYLNWFQQRPGQSPRRLIYRVSNRDSGVPDRFSGSGSGTDFTLKISRVEAEDVGLYYCMQHTHWSPITFGQGTRLEIKR Prediction 75331313131210233341302011234414034634040403122213444443101011234643132002301436332033232333323230404423341202000103463313101432333348   Values range from 0 (buried residue) to 9 (highly exposed residue)