Homework 1 of week 1 -YJ code:309ir

1. Install and Learn BioPerl -YJ code:309ir
2. Make a Perl program translating 'all' combinations of triple bases into amino acids -YJ code:309ir
3. Pick 5 protein sequences and predict their secondary structures using available prediction programs -YJ code:309ir
4. Open and re-write one FASTA file containing one protein sequence of TERT -YJ code:309ir
5. Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file -YJ code:309ir
6. Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file -YJ code:309ir
7. In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc -YJ code:309ir
8. Align two protein sequences using a dynamic programming method in Perl -YJ code:309ir
9. Randomly generate five 100 AA long protein sequences and store them in a FASTA file -YJ code:309ir
10. Create a flat text file database of protein sequences with hash function in Perl -YJ code:309ir