Programing - homework
From Biolecture.org
Revision as of 02:43, 8 June 2017 by imported>SeongEon Park
+ Install and learn bioperl
+ Make a perl grogram translating 'all' combinations of triple bases into amino acids
+ Pick 5 protein sequences and predict their secondary structures using available prediction programs
+ Open and re-write one FASTA file containing one protein sequence of TERT
+ Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file
+ In a multi-sequence FASTA file, produce statistics such as sequenec number, average seq length, GC content, AT content. etc
+ Align two protein sequence using a dynamic programming method in Perl
+ Randomly generate five 100 AA long protein sequences and store them in a FASTA file
+ Create a flat text file database of protein sequences with hash function in Perl
