Homework in the bioinformatics class

Homework 1. Make a Perl program translating 'all' combinations of triple bases into amino acids

Homework 2. Pick 5 protein sequences and predict their secondary structures using available prediction programs

Homework 3. Open and re-write one FASTA file containing one protein sequence of TERT

Homework 4. Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file

Homework 5. Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file

Homework 6. In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc

Homework 7. Align two protein sequences using a dynamic programming method in Perl

Homework 8. Randomly generate five 100 AA long protein sequences and store them in a FASTA file

Homework 9. Create a flat text file database of protein sequences with hash function in Perl

 

 

 

 

 

 

 

 

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Youngkwang_Jung_-_bioinformatics