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Reference paper list for Bioinformatics

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<div style="vertical-align: baseline; background: white; margin: 4.5pt 0cm 0pt; line-height: 13.5pt">Liverome: a curated database of liver cancer-related gene signatures with self-contained context information. <a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Lee%20L%5BAuthor%5D&cauthor=true&cauthor_uid=22369201"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Lee L, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Wang%20K%5BAuthor%5D&cauthor=true&cauthor_uid=22369201"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Wang K, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Li%20G%5BAuthor%5D&cauthor=true&cauthor_uid=22369201"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Li G, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Xie%20Z%5BAuthor%5D&cauthor=true&cauthor_uid=22369201"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Xie Z, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Wang%20Y%5BAuthor%5D&cauthor=true&cauthor_uid=22369201"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Wang Y, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Xu%20J%5BAuthor%5D&cauthor=true&cauthor_uid=22369201"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Xu J, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Sun%20S%5BAuthor%5D&cauthor=true&cauthor_uid=22369201"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Sun S, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Pocalyko%20D%5BAuthor%5D&cauthor=true&cauthor_uid=22369201"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Pocalyko D, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Bhak%20J%5BAuthor%5D&cauthor=true&cauthor_uid=22369201"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Bhak J, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Kim%20C%5BAuthor%5D&cauthor=true&cauthor_uid=22369201"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Kim C, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Lee%20KH%5BAuthor%5D&cauthor=true&cauthor_uid=22369201"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Lee KH, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Jang%20YJ%5BAuthor%5D&cauthor=true&cauthor_uid=22369201"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Jang YJ, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Yeom%20YI%5BAuthor%5D&cauthor=true&cauthor_uid=22369201"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Yeom YI, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Yoo%20HS%5BAuthor%5D&cauthor=true&cauthor_uid=22369201"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Yoo HS, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Hwang%20S%5BAuthor%5D&cauthor=true&cauthor_uid=22369201"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Hwang S. </a><a title="BMC genomics." href="http://www.ncbi.nlm.nih.gov/pubmed/22369201"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">BMC Genomics 2011 Nov 30;12 Suppl 3:S3. Epub 2011 Nov 30.<span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">.</a></div>

<div style="vertical-align: baseline; background: white; margin: 4.5pt 0cm 0pt; line-height: 13.5pt">Identification of close relatives in the HUGO Pan-Asian SNP database. <a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Yang%20X%5BAuthor%5D&cauthor=true&cauthor_uid=22242128"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Yang X, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Xu%20S%5BAuthor%5D&cauthor=true&cauthor_uid=22242128"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Xu S; </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=HUGO%20Pan-Asian%20SNP%20Consortium%5BCorporate%20Author%5D"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">HUGO Pan-Asian SNP Consortium.</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Indian%20Genome%20Variation%20Consortium%5BCorporate%20Author%5D"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Indian Genome Variation Consortium. </a><a title="PloS one." href="http://www.ncbi.nlm.nih.gov/pubmed/22242128"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">PLoS One. 2011;6(12):e29502. Epub 2011 Dec 29.</a></div>

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<div style="vertical-align: baseline; background: white; margin: 4.5pt 0cm 0pt; line-height: 13.5pt">De novo transcriptome sequencing of Momordica cochinchinensis to identify genes involved in the carotenoid biosynthesis. <a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Hyun%20TK%5BAuthor%5D&cauthor=true&cauthor_uid=22580955"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Hyun TK, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Rim%20Y%5BAuthor%5D&cauthor=true&cauthor_uid=22580955"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Rim Y, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Jang%20HJ%5BAuthor%5D&cauthor=true&cauthor_uid=22580955"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Jang HJ, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Kim%20CH%5BAuthor%5D&cauthor=true&cauthor_uid=22580955"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Kim CH, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Park%20J%5BAuthor%5D&cauthor=true&cauthor_uid=22580955"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Park J, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Kumar%20R%5BAuthor%5D&cauthor=true&cauthor_uid=22580955"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Kumar R, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Lee%20S%5BAuthor%5D&cauthor=true&cauthor_uid=22580955"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Lee S, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Kim%20BC%5BAuthor%5D&cauthor=true&cauthor_uid=22580955"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Kim BC, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Bhak%20J%5BAuthor%5D&cauthor=true&cauthor_uid=22580955"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Bhak J, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Nguyen-Quoc%20B%5BAuthor%5D&cauthor=true&cauthor_uid=22580955"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Nguyen-Quoc B, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Kim%20SW%5BAuthor%5D&cauthor=true&cauthor_uid=22580955"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Kim SW, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Lee%20SY%5BAuthor%5D&cauthor=true&cauthor_uid=22580955"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Lee SY, </a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Kim%20JY%5BAuthor%5D&cauthor=true&cauthor_uid=22580955"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Kim JY. </a><a title="Plant molecular biology." href="http://www.ncbi.nlm.nih.gov/pubmed/22580955"><span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">Plant Mol Biol 2012 Jul;79(4-5):413-27. Epub 2012 May 12.<span style="border-top: windowtext 1pt; border-right: windowtext 1pt; background: white; border-bottom: windowtext 1pt; color: black; padding-bottom: 0cm; padding-top: 0cm; padding-left: 0cm; border-left: windowtext 1pt; padding-right: 0cm">.</a></div>

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<div style="line-height: 120%">Mutational hotspots in the mitochondrial genome of lung cancer. Choi SJ, Kim SH, Kang HY, Lee J, Bhak JH, Sohn I, Jung SH, Choi YS, Kim HK, Han J, Huh N, Lee G, Kim BC, Kim J. Biochem Biophys Res Commun. 2011 Apr 1;407(1):23-7. Epub 2011 Feb 18.</div>

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<div style="line-height: 120%">Population genetic structure of peninsular Malaysia Malay sub-ethnic groups. Hatin WI, Nur-Shafawati AR, Zahri MK, Xu S, Jin L, Tan SG, Rizman-Idid M, Zilfalil BA; HUGO Pan-Asian SNP Consortium. PLoS One. 2011 Apr 5;6(4):e18312.</div>

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PDbase: a database of Parkinson's Disease-related genes and genetic variation using substantia nigra ESTs.Yang JO, Kim WY, Jeong SY, Oh JH, Jho S, Bhak J*, and Kim NS*. BMC Genomics 2009, 10(Suppl 3):S32 (3 December 2009).</a></div>

<div style="margin-bottom: 0pt">83) MitoInteractome: Mitochondrial protein interactome database, and its application in 'aging network' analysis. Reja R, Venkatakrishnan AJ, Lee J, Kim BC, Ryu JW, Gong S, Bhak J*, and  Park D*. BMC Genomics 2009, 10(Suppl 3):S20 (3 December 2009).

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PutidaNET: Interactome database service and network analysis of Pseudomonas putida KT2440.Park SJ, Choi JS, Kim BC, Jho SW, Ryu JW, Park D, Lee KA, Bhak J*, and Kim SI*. BMC Genomics 2009, 10(Suppl 3):S18 (3 December 2009).

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The Korean Bird Information System (KBIS) through open and public participation. Paik IH, Lim J, Chun BS, Jin SD, Yu JP, Lee JW, Bhak J, and Paek WK. BMC Bioinformatics 2009, 10(Suppl 15):S11 (3 December 2009).

Gevab: a prototype genome variation analysis browsing server. Kim WY, Kim SY, Kim TH, Ahn SM, Byun HN, Kim D, Kim DS, Lee YS, Ghang H, Park D, Kim BC, Kim C, Lee S, Kim SJ, and Bhak J*. BMC Bioinformatics 2009, 10(Suppl 15):S3 (3 December 2009). </div>

ssSNPTarget: Genome-Wide Splice-Site Single Nucleotide Polymorphism Database. Ok Yang J, Kim WY, and Bhak J. Human mutation, 2009 Sep. 16th, PMID: 19760752.

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74) Planning the Human Variome Project: The Spain report. Kaput J, Cotton RG, Hardman L, Watson M, Al Aqeel AI, Al-Aama JY, Al-Mulla F, Alonso S, Aretz S, Auerbach AD, Bapat B, Bernstein IT, Bhak J, Bleoo SL, Blöcker H, Brenner SE, Burn J, Bustamante M, Calzone R, Cambon-Thomsen A, Cargill M, Carrera P, Cavedon L, Cho YS, Chung YJ, Claustres M, Cutting G, Dalgleish R, den Dunnen JT, Díaz C, Dobrowolski S, Dos Santos MR, Ekong R, Flanagan SB, Flicek P, Furukawa Y, Genuardi M, Ghang H, Golubenko MV, Greenblatt MS, Hamosh A, Hancock JM, Hardison R, Harrison TM, Hoffmann R, Horaitis R, Howard HJ, Barash CI, Izagirre N, Jung J, Kojima T, Laradi S, Lee YS, Lee JY, Gil-da-Silva-Lopes VL, Macrae FA, Maglott D, Marafie MJ, Marsh SG, Matsubara Y, Messiaen LM, Möslein G, Netea MG, Norton ML, Oefner PJ, Oetting WS, O'Leary JC, de Ramirez AM, Paalman MH, Parboosingh J, Patrinos GP, Perozzi G, Phillips IR, Povey S, Prasad S, Qi M, Quin DJ, Ramesar RS, Richards CS, Savige J, Scheible DG, Scott RJ, Seminara D, Shephard EA, Sijmons RH, Smith TD, Sobrido MJ, Tanaka T, Tavtigian SV, Taylor GR, Teague J, Töpel T, Ullman-Cullere M, Utsunomiya J, van Kranen HJ, Vihinen M, Webb E, Weber TK, Yeager M, Yeom YI, Yim SH, Yoo HS; on behalf of contributors to the Human Variome Project Planning Meeting. Hum Mutat. 2009 March 20; 30(4):496-510.  PMID: 19306394 [PubMed - indexed for MEDLINE].

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73) Kinetics of Zn2+ -induced Brain Type Creatine Kinase Unfolding and Aggregation. Mu H, Lü ZR, Park D, Kim BC, Bhak J, Zou F, Yang JM, Li S, Park YD, Zou HC, Zhou HM. Appl Biochem Biotechnol. 2009 Mar 11.

72) Profiling the dysregulated genes of keratinocytes in atopic dermatitis patients: cDNA microarray and interactomic analyses. Lü ZR, Park D, Lee KA, Ryu JW, Bhak J, Shi L, Lee DY, Park YD, Zou F, Yang JM. J Dermatol Sci. 2009 Jan 19.</div>

70) Dysregulated genes of extrinsic type of atopic dermatitis: 34K microarray and interactomic analyses. Zhi-Rong Lü1, a, Tae-Ho Park1, b, Eil-Soo Leec, Kea-Jeung Kimb, Daeui Parkd, Byoung-Chul Kim, Seong-Woong Chod, Jong Bhak, Yong-Doo Park, Fei Zoua, and Jun-Mo Yang. Journal of Dermatological Science, 2009, 53(2):146-165.

~~69) Personal Genomics, Bioinformatics, and Variomics. Jong Bhak, Ho Ghang, Rohit Reja, and Sangsoo Kim. Genomics & Informatics, 2008, 6(4):161-165. ~~

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68) An integrated korean biodiversity and genetic information retrieval system. Jeongheui Lim, Jong Bhak, Hee-Mock Oh, Chang-Bae Kim, Yong-Ha Park, and Woon Kee Paek. BMC Bioinformatics, 2008, 9(12):S24.

67) An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases. Jin Ok Yang, Sohyun Hwang, Jeongsu Oh, Jong Bhak, and Tae-Kwon Sohn. BMC Bioinformatics, 2008, 9(12):S19.

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