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Reference paper list for Bioinformatics

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<p>Genome Biology.2014, 15:R55&nbsp; DOI: 10.1186/gb-2014-15-4-r55&nbsp;&nbsp;&nbsp; <a href="http://genomebiology.com/2014/15/4/R55">http://genomebiology.com/2014/15/4/R55</a></p>
<div><font size="4">Intermediate sequences find distant sequence homologues. Jong Park, Sarah A. Teichmann, Tim Hubbard and Cyrus Chothia. Journal of Molecular Biology, 17, Oct, 1997, 273(1):349-354. (ISSN:0022-2836) </font></div>
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<div><font size="4">The first Korean genome sequence and analysis: Full genome sequencing for a socio-ethnic group. Sung-Min Ahn, Tae-Hyung Kim, Sunghoon Lee, Deokhoon Kim, Ho Ghang, Daesoo Kim, Byoung-Chul Kim, Sang-Yoon Kim, Woo-Yeon Kim, Chulhong Kim, Daeui Park, Yong Seok Lee, Sangsoo Kim, Rohit Reja, Sungwoong Jho, Chang Geun Kim, Ji-Young Cha, Kyung-Hee Kim, Bonghee Lee, Jong Bhak*, and Seong-Jin Kim*. </font><em><font size="4">Genome Research</font></em><font size="4">, May 26, 2009. PMID: 19470904.</font></div>
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<div style="line-height: 120%"><span style="font-size: medium"><span style="line-height: 120%">Population genetic structure of peninsular Malaysia Malay sub-ethnic groups.&nbsp;Hatin WI, Nur-Shafawati AR, Zahri MK, Xu S, Jin L, Tan SG, Rizman-Idid M, Zilfalil BA; HUGO Pan-Asian SNP Consortium.&nbsp;<i>PLoS One.</i> 2011 Apr 5;6(4):e18312.</span></span></div>
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<div style="line-height: 120%"><span style="font-size: medium"><span style="line-height: 120%">BetaDock: shape-priority docking method based on beta-complex.&nbsp;Kim DS, Kim CM, Won CI, Kim JK, Ryu J, Cho Y, Lee C, Bhak J. <i>J Biomol Struct Dyn</i>. 2011 Aug;29(1):219-42.</span></span></div>
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<div style="line-height: 120%"><span style="font-size: medium"><span style="line-height: 120%">PanSNPdb: the Pan-Asian SNP genotyping database.&nbsp;Ngamphiw C, Assawamakin A, Xu S, Shaw PJ, Yang JO, Ghang H, Bhak J, Liu E, Tongsima S; HUGO Pan-Asian SNP Consortium.&nbsp;<i>PLoS One</i>. 2011;6(6):e21451. Epub 2011 Jun 23.</span></span></div>
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<div style="line-height: 120%"><span style="font-size: medium"><span style="line-height: 120%">Gene expression pattern in transmitochondrial cytoplasmic hybrid cells harboring type 2 diabetes-associated mitochondrial DNA haplogroups. Hwang S, Kwak SH, Bhak J, Kang HS, Lee YR, Koo BK, Park KS, Lee HK, Cho YM.&nbsp;<i>PLoS One</i>. 2011;6(7):e22116. Epub 2011 Jul 13.</span></span></div>
<div style="line-height: 120%"><span style="font-size: medium"><span style="line-height: 120%">Protein network prediction and topological analysis in Leishmania major as a tool for drug target selection.&nbsp;Fl&oacute;rez AF, Park D, Bhak J, Kim BC, Kuchinsky A, Morris JH, Espinosa J, Muskus C.&nbsp;</span></span></div>
<div style="line-height: 120%"><span style="font-size: medium"><i><span style="line-height: 120%">BMC Bioinformatics</span></i><span style="line-height: 120%">. 2010 Sep 27;11:484.</span></span></div>
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<div><span style="font-size: medium"><span style="background: white; color: black">Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome.&nbsp;Moon Young Kima,1, Sunghoon Leeb,1,2, Kyujung Vana,1, Tae-Hyung Kimb,1,2, Soon-Chun Jeongc, Ik-Young Choid, Dae-Soo Kimb, Yong-Seok Leeb, Daeui Parkb, Jianxin Mae, Woo-Yeon Kimb, Byoung-Chul Kimb, Sungjin Parkb, Kyung-A Leeb, Dong Hyun Kima, Kil Hyun Kima, Jin Hee Shina, Young Eun Janga, Kyung Do Kima, Wei Xian Liua, Tanapon Chaisana, Yang Jae Kanga, Yeong-Ho Leea, Kook-Hyung Kimf, Jung-Kyung Moong, Jeremy Schmutzh, Scott A. Jacksone,&nbsp;Jong Bhak*&nbsp;and Suk-Ha Lee*. <i>Proc Natl Acad Sci</i> U S A. 2010 Dec 21;107(51):22032-7. Epub 2010 Dec 3.<br />
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87)&nbsp;Gene Flow between the Korean Peninsula and Its Neighboring Countries.&nbsp;Jongsun Jung, Hoyoung Kang, Yoon Shin Cho, Ji Hee Oh, Min Hyung Ryu, Hye Won Chung, Jeong-Sun Seo, Jong-Eun Lee, Bermseok Oh,&nbsp;Jong Bhak, and Hyung-Lae Kim*. <i>PLoS ONE</i> 5(7):e11855. doi:10.1371/journal.pone.0011855. 20100729 </span><br />
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86) PDBWiki: added value through community annotation of the Protein Data Bank. Henning Stehr,*, Jose M. Duarte1, Michael Lappe1, Jong Bhak,* and Dan M. Bolser. <i>Database</i>, Vol. 2010:baq009; doi:10.1093/database/baq009.<br />
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85) Mapping Human Genetic Diversity in Asia. The HUGO Pan-Asian SNP Consortium. <i>Science</i>. 2009. Dec. 11th. (As the Korean Principal Investigator) </span><a href="http://www.ncbi.nlm.nih.gov/pubmed/20007900"><span style="font-size: medium"><font color="#0000ff">http://www.ncbi.nlm.nih.gov/pubmed/20007900</font> <br />
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84)&nbsp;PDbase: a database of Parkinson's Disease-related genes and genetic variation using substantia nigra ESTs.Yang JO, Kim WY, Jeong SY, Oh JH, Jho S, Bhak J*, and&nbsp;Kim NS*. <i>BMC Genomics</i> 2009, 10(Suppl 3):S32 (3 December 2009).</span></a></div>
<div style="margin-bottom: 0pt"><span style="font-size: medium">83)&nbsp;MitoInteractome: Mitochondrial protein interactome database, and its application in 'aging network' analysis. Reja R, Venkatakrishnan AJ, Lee J, Kim BC, Ryu JW, Gong S, Bhak J*, and &nbsp;Park D*. <i>BMC Genomics</i> 2009, 10(Suppl 3):S20 (3 December 2009).<br />
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82) PutidaNET: Interactome database service and network analysis of Pseudomonas putida KT2440.Park SJ, Choi JS, Kim BC, Jho SW, Ryu JW, Park D, Lee KA, Bhak J*, and Kim SI*. <i>BMC Genomics</i> 2009, 10(Suppl 3):S18 (3 December 2009).<br />
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81) The Korean Bird Information System (KBIS) through open and public participation.&nbsp;Paik IH, Lim J, Chun BS, Jin SD, Yu JP, Lee JW, Bhak J, and Paek WK. <em>BMC Bioinformatics</em> 2009, 10(Suppl 15):S11 (3 December 2009).<br />
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80) Gevab: a prototype genome variation analysis browsing server. Kim WY, Kim SY, Kim TH, Ahn SM, Byun HN, Kim D, Kim DS, Lee YS, Ghang H, Park D, Kim BC, Kim C, Lee S, Kim SJ, and Bhak J*<span style="font-weight: normal">.</span> <i>BMC Bioinformatics</i> 2009, 10(Suppl 15):S3 (3 December 2009).&nbsp;</span></div><div style="margin-bottom: 0pt">&nbsp;</div><div style="margin-bottom: 0pt"><span style="font-size: medium">79) MitoVariome: a variome database of human mitochondrial DNA. Lee YS, Kim WY, Ji M, Kim JH, and Bhak J*<span style="font-weight: normal">.</span> <i>BMC Genomics</i> 2009, 10(Suppl 3):S12 (3 December 2009).<br />
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78) COMUS: Clinician-Oriented locus-specific MUtation detection and deposition System. <br />
Jho S, Kim BC, Ghang H, Kim JH, Park D, Kim HM, Jung S, Yoo K, Kim HJ, Lee S, and Bhak J*. <i>BMC Genomics</i> 2009, 10(Suppl 3):S35 (3 December 2009).<br />
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77) BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources.Lim J, Kim SY, Kim S, Eo HS, Kim CB, Paek WK, Kim W*, and Bhak J*. <i>BMC Genomics 2009</i>, 10(Suppl 3):S8 (3 December 2009).<br /><br />ssSNPTarget: Genome-Wide Splice-Site Single Nucleotide Polymorphism Database. Ok Yang J, Kim WY, and Bhak J. <em>Human mutation, 2009 Sep. 16th, </em>PMID: 19760752.<br />
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76) ssSNPTarget: Genome-Wide Splice-Site Single Nucleotide Polymorphism Database. Ok Yang J, Kim WY, and Bhak J. <em>Human mutation, 2009 Sep. 16th, </em>PMID: 19760752.<br />
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75) The first Korean genome sequence and analysis: Full genome sequencing for a socio-ethnic group. Sung-Min Ahn, Tae-Hyung Kim, Sunghoon Lee, Deokhoon Kim, Ho Ghang, Daesoo Kim, Byoung-Chul Kim, Sang-Yoon Kim, Woo-Yeon Kim, Chulhong Kim, Daeui Park, Yong Seok Lee, Sangsoo Kim, Rohit Reja, Sungwoong Jho, Chang Geun Kim, Ji-Young Cha, Kyung-Hee Kim, Bonghee Lee, Jong Bhak*, and Seong-Jin Kim*. <em>Genome Research</em>, May 26, 2009. PMID: 19470904.<br />
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74) Planning the Human Variome Project: The Spain report. Kaput J, Cotton RG, Hardman L, Watson M, Al Aqeel AI, Al-Aama JY, Al-Mulla F, Alonso S, Aretz S, Auerbach AD, Bapat B, Bernstein IT, Bhak J, Bleoo SL, Bl&ouml;cker H, Brenner SE, Burn J, Bustamante M, Calzone R, Cambon-Thomsen A, Cargill M, Carrera P, Cavedon L, Cho YS, Chung YJ, Claustres M, Cutting G, Dalgleish R, den Dunnen JT, D&iacute;az C, Dobrowolski S, Dos Santos MR, Ekong R, Flanagan SB, Flicek P, Furukawa Y, Genuardi M, Ghang H, Golubenko MV, Greenblatt MS, Hamosh A, Hancock JM, Hardison R, Harrison TM, Hoffmann R, Horaitis R, Howard HJ, Barash CI, Izagirre N, Jung J, Kojima T, Laradi S, Lee YS, Lee JY, Gil-da-Silva-Lopes VL, Macrae FA, Maglott D, Marafie MJ, Marsh SG, Matsubara Y, Messiaen LM, M&ouml;slein G, Netea MG, Norton ML, Oefner PJ, Oetting WS, O'Leary JC, de Ramirez AM, Paalman MH, Parboosingh J, Patrinos GP, Perozzi G, Phillips IR, Povey S, Prasad S, Qi M, Quin DJ, Ramesar RS, Richards CS, Savige J, Scheible DG, Scott RJ, Seminara D, Shephard EA, Sijmons RH, Smith TD, Sobrido MJ, Tanaka T, Tavtigian SV, Taylor GR, Teague J, T&ouml;pel T, Ullman-Cullere M, Utsunomiya J, van Kranen HJ, Vihinen M, Webb E, Weber TK, Yeager M, Yeom YI, Yim SH, Yoo HS; on behalf of contributors to the Human Variome Project Planning Meeting. Hum Mutat. 2009 March 20; 30(4):496-510.&nbsp; PMID: 19306394 [PubMed - indexed for MEDLINE].<br />
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