Changes
no edit summary
<p><font size="+0"><u><span style="font-size: 16pt; line-height: 107%">Course Description</span></u><span style="font-size: 16pt; line-height: 107%"> for BME324, Genomics</span></font></p>
<p style="margin: 0cm 0cm 8pt"><span style="font-size: 11pt; line-height: 107%"><font size="+0">by [[Jong Bhak]] (jongbhak@gmail.com)</font></span><span><br /><font size="+0"><font size="2"><br /></font></font></span><span style="font-size: 11pt; line-height: 107%"><font size="+0">Genomics is the new name for genetics that encompasses not only traditional<br />
genetics research and technology topics but also includes information technology, systems biology, high throughput biodata generation, processing, and analyses. </font></span></p>
<p style="margin: 0cm 0cm 8pt"><span style="font-size: 11pt; line-height: 107%"><font size="+0">It covers areas such as sequencing, DNA synthesis, and genome writing and editing.<br />Genomics course requires the students to have been exposed to general<br />biology, data processing, statistics, mathematics, and computer science.<br />The genomic research can be largely divided into experimental and informatic<br />parts. The course will not cover hands-on experiments due to space limitation.<br />Students who took this subject will be able to understand life in terms of information processing </font></span><span style="font-size: 11pt; line-height: 107%"><font size="+0">with much knowledge on how to use technologies to solve problems such as curing cancer and aging.<br />
</font></span></p>
<p style="margin: 0cm 0cm 8pt"><span style="font-size: 11pt; line-height: 107%"><font size="+0">The topics of genomics include:<br /><br />1. What is life, information, and the universe? (as information processing objects)<br />2. What is Omics? (as an approach of understanding life)<br />3. What is 'Big data' in biology?<br />4. How molecules and cells propagate in the universe?<br />
5. Genome reading and writing</font></span></p>
<p style="margin: 0cm 0cm 8pt"><span style="font-size: 11pt; line-height: 107%"><font size="+0">6. Curing Cancer using genomics (Oncomics)</font></span></p>
<div style="margin: 0cm 0cm 8pt"><span style="font-size: 11pt; line-height: 107%"> </span></div>
<p>
<table border="0" style="border-collapse: collapse" cellspacing="0" cellpadding="0" border="0">
<tbody>
<tr style="height: 12.75pt">
<td style="border-top: black 1pt solid; height: 12.75pt; border-right: rgb(0,0,0) 0px; width: 110.95pt; border-bottom: rgb(0,0,0) 0px; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent; border-image: none" widthcolspan="1852" colspanwidth="2185">
<div style="margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all"><span style="color: black; line-height: 160%"><font size="2"> </font></span></div>
<div style="margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all"><span style="color: black; line-height: 160%"><font size="2"> </font></span></div>
<div style="margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all"><span style="color: black; line-height: 160%"><font size="2"> </font></span></div>
</td>
<td style="border-top: black 1pt solid; height: 12.75pt; border-right: rgb(0,0,0) 0px; width: 73.5pt; border-bottom: rgb(0,0,0) 0px; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent; border-image: none" widthcolspan="1232" colspanwidth="2123">
<div style="margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all"><span style="color: black; line-height: 160%"><font size="2"> </font></span></div>
</td>
</tr>
<tr style="height: 12.75pt">
<td style="border-top: rgb(0,0,0) 0px; height: 12.75pt; border-right: rgb(0,0,0) 0px; width: 451.3pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent; border-image: none" widthcolspan="7528" colspanwidth="8752">
<div style="margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all"><span style="color: black; line-height: 160%"><font size="2">Text</font></span></div>
</td>
<div style="margin: 0cm 0cm 8pt; line-height: normal; -ms-word-break: keep-all"><span style="color: black"><font size="2">Category</font></span></div>
</td>
<td style="border-top: rgb(0,0,0) 0px; height: 15.75pt; border-right: rgb(0,0,0) 0px; width: 235.3pt; border-bottom: rgb(0,0,0) 0px; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent; border-image: none" widthcolspan="3925" colspanwidth="5392">
<div style="margin: 0cm 0cm 8pt; line-height: normal; -ms-word-break: keep-all"><span style="color: red"><font size="2">Book</font></span></div>
</td>
<td style="border-top: rgb(0,0,0) 0px; height: 15.75pt; border-right: black 1pt solid; width: 109.95pt; border-bottom: rgb(0,0,0) 0px; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent; border-image: none" widthcolspan="1832" colspanwidth="2183">
<div style="margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all"><span style="color: black; line-height: 160%"><font size="2"> </font></span></div>
</td>
<div style="margin: 0cm 0cm 8pt; line-height: normal; -ms-word-break: keep-all"><span style="color: black"><font size="2">Title</font></span></div>
</td>
<td style="border-top: rgb(0,0,0); height: 15.75pt; border-right: rgb(0,0,0); width: 235.3pt; border-bottom: rgb(0,0,0); padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0); padding-right: 1.4pt; background-color: transparent" widthcolspan="3925" colspanwidth="5392">
<div style="margin: 0cm 0cm 8pt; line-height: normal; -ms-word-break: keep-all"><span style="color: red"><font size="2">[[Introduction to Genomics]]</font></span></div>
</td>
<td style="border-top: rgb(0,0,0) 0px; height: 15.75pt; border-right: black 1pt solid; width: 109.95pt; border-bottom: rgb(0,0,0) 0px; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent; border-image: none" widthcolspan="1832" colspanwidth="2183">
<div style="margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all"><span style="color: black; line-height: 160%"><font size="2"> </font></span></div>
</td>
<div style="margin: 0cm 0cm 8pt; line-height: normal; -ms-word-break: keep-all"><span style="color: black"><font size="2">Author</font></span></div>
</td>
<td style="border-top: rgb(0,0,0); height: 15.75pt; border-right: rgb(0,0,0); width: 235.3pt; border-bottom: rgb(0,0,0); padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0); padding-right: 1.4pt; background-color: transparent" widthcolspan="3925" colspanwidth="5392">
<div style="margin: 0cm 0cm 8pt; line-height: normal; -ms-word-break: keep-all"><span style="color: red"><font size="2">Arthur M. Lesk,</font></span></div>
</td>
<td style="border-top: rgb(0,0,0) 0px; height: 15.75pt; border-right: black 1pt solid; width: 109.95pt; border-bottom: rgb(0,0,0) 0px; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent; border-image: none" widthcolspan="1832" colspanwidth="2183">
<div style="margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all"><span style="color: black; line-height: 160%"><font size="2"> </font></span></div>
</td>
<div style="margin: 0cm 0cm 8pt; line-height: normal; -ms-word-break: keep-all"><span style="color: black"><font size="2">ISBN</font></span></div>
</td>
<td style="border-top: rgb(0,0,0); height: 15.75pt; border-right: rgb(0,0,0); width: 235.3pt; border-bottom: rgb(0,0,0); padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0); padding-right: 1.4pt; background-color: transparent" widthcolspan="3925" colspanwidth="5392">
<div style="margin: 0cm 0cm 8pt; line-height: normal; -ms-word-break: keep-all"><span style="color: black"><font size="2"> </font></span></div>
</td>
<td style="border-top: rgb(0,0,0) 0px; height: 15.75pt; border-right: black 1pt solid; width: 109.95pt; border-bottom: rgb(0,0,0) 0px; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent; border-image: none" widthcolspan="1832" colspanwidth="2183">
<div style="margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all"><span style="color: black; line-height: 160%"><font size="2"> </font></span></div>
</td>
<div style="margin: 0cm 0cm 8pt; line-height: normal; -ms-word-break: keep-all"><span style="color: black"><font size="2">Remarks</font></span></div>
</td>
<td style="border-top: rgb(0,0,0); height: 15.75pt; border-right: rgb(0,0,0); width: 235.3pt; border-bottom: rgb(0,0,0); padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0); padding-right: 1.4pt; background-color: transparent" widthcolspan="3925" colspanwidth="5392">
<div style="margin: 0cm 0cm 8pt; line-height: normal; -ms-word-break: keep-all"><span style="color: black"><font size="2"> </font></span><span style="color: red"><font size="2">Oxford University Press</font></span></div>
</td>
<td style="border-top: rgb(0,0,0) 0px; height: 15.75pt; border-right: black 1pt solid; width: 109.95pt; border-bottom: rgb(0,0,0) 0px; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent; border-image: none" widthcolspan="1832" colspanwidth="2183">
<div style="margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all"><span style="color: black; line-height: 160%"><font size="2"> </font></span></div>
</td>
<div style="margin: 0cm 0cm 8pt; line-height: normal; -ms-word-break: keep-all"><span style="color: black"><font size="2">Course Reserves Designation</font></span></div>
</td>
<td style="border-top: rgb(0,0,0) 0px; height: 7.8pt; border-right: rgb(0,0,0) 0px; width: 235.3pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent; border-image: none" widthcolspan="3925" colspanwidth="5392">
<div style="margin: 0cm 0cm 8pt; line-height: normal; -ms-word-break: keep-all"><span style="color: black"><font size="2"> </font></span></div>
</td>
<td style="border-top: rgb(0,0,0) 0px; height: 7.8pt; border-right: black 1pt solid; width: 109.95pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" widthcolspan="1832" colspanwidth="2183">
<div style="margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all"><span style="color: black; line-height: 160%"><font size="2"> </font></span></div>
</td>
</tr>
<tr style="height: 15.75pt">
<td style="border-top: rgb(0,0,0) 0px; height: 15.75pt; border-right: rgb(0,0,0) 0px; width: 110.95pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent; border-image: none" widthcolspan="1852" colspanwidth="2185">
<div style="margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all"><span style="color: black; line-height: 160%"><font size="2">References</font></span></div>
</td>
<div style="margin: 0cm 0cm 8pt; line-height: 160%; -ms-word-break: keep-all"><span style="font-size: 12pt; color: black; line-height: 160%">Weekly Schedule</span></div>
<p>
<table border="0" style="border-collapse: collapse" cellspacing="0" cellpadding="0" border="0">
<tbody>
<tr style="height: 14.7pt">
<td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684">
<div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"> </div>
<div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> (Course orientation)</font></span></div> <div style="text, Self-alignCricial Evaluation: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> </font><font size="2">What is the Biological Universe? SCE), Homework, Presentation, and Research</font></span></div> <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> Mathematics, Physics, Chemistry, </font></span></div>
</td>
</tr>
<div style="text-align: center; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="center"><span style="color: black; line-height: 107%"><font size="2">02</font></span></div>
</td>
<td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684"> <div style="text-align: left margin: 0cm 0cm 8pt text-indent: 5pt -ms-word-break: keep-all" align="left"><span style="color: black line-height: 107% serif: "><font size="2">What is Life on Earth and beyond?</font></span></div> <div style="text-align: left; margin: 0cm 0cm 8pt; text-indent: 5pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> Chemistry and Biochemistry, Biologyof Genomics</font></span></div> <div style="text-align: left; margin: 0cm 0cm 8pt; text-indent: 5pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> [[Sequencing]], [[PCR]], </font></span></div>
<div style="text-align: left; margin: 0cm 0cm 8pt; text-indent: 5pt; -ms-word-break: keep-all" align="left"> </div>
</td>
</td>
<td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684">
<div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> What is reference?</font></span></div> <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> [[Alignment]]</font></span></div> <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"> </div>
</td>
</tr>
<div style="margin: 0cm 0cm 8pt"><font size="2"> </font></div>
<p>
<table border="0" style="border-collapse: collapse" cellspacing="0" cellpadding="0" border="0">
<tbody>
<tr style="height: 12.75pt">
</tr>
<tr style="height: 55.85pt">
<td style="border-top: rgb(0,0,0) 0px; height: 55.85pt; border-right: black 1pt solid; width: 505.5pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" widthcolspan="8432" colspanwidth="2843">
<div style="margin: 0cm 0cm 8pt; line-height: 160%; text-indent: 5pt; -ms-word-break: keep-all"><span style="color: red; line-height: 160%"><font size="2">Research report writing and presentation (100%)</font></span></div>
<p style="margin: 0cm 0cm 8pt; line-height: 160%; text-indent: 5pt; -ms-word-break: keep-all"><span style="color: red; line-height: 160%"><font size="2">Each week, before, class, students are asked to submit research reports on genomics topics.</font></span></p>