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Basic Perl Grammar

870 bytes added, 21:29, 14 June 2016
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<p>\n : new line character. It designates the end of a line of text and the start of a new line</p>
 
<p>exit : Instruction for end of the program</p>
<p>Variable : The place to store data</p>
<p>= : Assignment operator to give a value to the variable</p>
 
<h3>To open a file using perl program</h3>
 
<p>&lt;STDIN&gt; : The link between perl program and file. We can get the values from a file using this standard input device</p>
 
<p>Ex) $DNAfilename = &lt;STDIN&gt;;</p>
 
<p>chomp $DNAfilename;&nbsp;&nbsp;&nbsp;: To remove the last&nbsp;new line character when you input your filename</p>
 
<p>open(DNAFILE, $DNAfilename);&nbsp;&nbsp; &nbsp;: to&nbsp;open a file, we have to&nbsp;make a link between perl program and the file using open function</p>
 
<p>$DNASeq = &lt;DNAFILE&gt;;&nbsp;&nbsp;&nbsp;&nbsp; :&nbsp;to read the open file - we can only read one line using scalar variable</p>
 
<p>while : to read the whole lines in a file</p>
 
<p>Ex) while( $DNASeq = &lt;DNAFILE&gt; )</p>
 
<p>close DNAFILE;&nbsp;&nbsp;&nbsp;&nbsp; : to close the open file</p>
 
<p>exit;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; &nbsp;: Instruction for end of the program</p>
 
<p>&nbsp;</p>
 
<p>&nbsp;</p>
<p>&nbsp;</p>
<p><a href="http://biolecture.org/index.php/KSH_0608_Bioinformatics_with_Bioperl" title="KSH 0608 Bioinformatics with Bioperl">KSH_0608 Bioinformatics with Bioperl</a></p>