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Created page with "<p>I used the sequence,<img alt="" src="/ckfinder/userfiles/images/%EC%BA%A1%EC%B2%983.PNG" style="height:106px; width:1064px" /> </p> <p>which was the sample sequence of t..."
<p>I used the sequence,<img alt="" src="/ckfinder/userfiles/images/%EC%BA%A1%EC%B2%983.PNG" style="height:106px; width:1064px" /> </p>
<p>which was the sample sequence of the predict protein. I took this sequence to the HHpred and got the alignment result.</p>
<p><img alt="" src="/ckfinder/userfiles/images/%EC%BA%A1%EC%B2%984.PNG" style="height:360px; width:751px" /></p>
<hr />
<p><strong>The highest alignment score-1hkx_A</strong></p>
<p><img alt="" src="/ckfinder/userfiles/images/%EC%BA%A1%EC%B2%985.PNG" style="height:407px; width:715px" /><img alt="" src="/ckfinder/userfiles/images/%EC%BA%A1%EC%B2%986.PNG" style="height:542px; width:1021px" /></p>
<hr />
<p><strong>No.2-3gmj_D</strong></p>
<p><strong><img alt="" src="/ckfinder/userfiles/images/%EC%BA%A1%EC%B2%987.PNG" style="height:413px; width:708px" /><img alt="" src="/ckfinder/userfiles/images/%EC%BA%A1%EC%B2%988.PNG" style="height:556px; width:999px" /></strong></p>
<p><strong>I could get 25 alignments from the HHpred</strong></p>
<hr />
<p>Then I predicted model with the <strong>SWISS-MODEL </strong>from: https://www.expasy.org/proteomics/protein_structure, with the same sequence.</p>
<p><img alt="" src="/ckfinder/userfiles/images/%EC%BA%A1%EC%B2%989.PNG" style="height:513px; width:1225px" /><img alt="" src="/ckfinder/userfiles/images/%EC%BA%A1%EC%B2%9810.PNG" style="height:590px; width:589px" /></p>
<p>which was the sample sequence of the predict protein. I took this sequence to the HHpred and got the alignment result.</p>
<p><img alt="" src="/ckfinder/userfiles/images/%EC%BA%A1%EC%B2%984.PNG" style="height:360px; width:751px" /></p>
<hr />
<p><strong>The highest alignment score-1hkx_A</strong></p>
<p><img alt="" src="/ckfinder/userfiles/images/%EC%BA%A1%EC%B2%985.PNG" style="height:407px; width:715px" /><img alt="" src="/ckfinder/userfiles/images/%EC%BA%A1%EC%B2%986.PNG" style="height:542px; width:1021px" /></p>
<hr />
<p><strong>No.2-3gmj_D</strong></p>
<p><strong><img alt="" src="/ckfinder/userfiles/images/%EC%BA%A1%EC%B2%987.PNG" style="height:413px; width:708px" /><img alt="" src="/ckfinder/userfiles/images/%EC%BA%A1%EC%B2%988.PNG" style="height:556px; width:999px" /></strong></p>
<p><strong>I could get 25 alignments from the HHpred</strong></p>
<hr />
<p>Then I predicted model with the <strong>SWISS-MODEL </strong>from: https://www.expasy.org/proteomics/protein_structure, with the same sequence.</p>
<p><img alt="" src="/ckfinder/userfiles/images/%EC%BA%A1%EC%B2%989.PNG" style="height:513px; width:1225px" /><img alt="" src="/ckfinder/userfiles/images/%EC%BA%A1%EC%B2%9810.PNG" style="height:590px; width:589px" /></p>