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Homework of week1-1

151 bytes added, 15:36, 20 May 2016
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<p><span style="font-size:20px"><strong>Subject :&nbsp;Learn Perl programming language and learn bioinformatics using it.</strong></span></p>
 
<p><strong>1. Install and Learn BioPerl</strong></p>
 
<p>Learn principle of perl</p>
<p>https://qntm.org/files/perl/perl_kr.html</p>
 
<p>&nbsp;</p>
<p>install perl and editor(Padre the Perl IDE)</p>
<p>&nbsp;</p>
<p>1. Learn Perl programming language and learn bioinformatics using it.<br /strong>Install and Learn BioPerl<br />2.Make a Perl program translating &#39;all&#39; combinations of triple bases into amino acids</strong></p> <p>&nbsp;</p> <p><br /><strong>3.Pick 5 protein sequences and predict their secondary structures using available prediction programs<br />4.Open and re-write one FASTA file containing one protein sequence of TERT<br />5.Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file<br />6.Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file<br />7.In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc<br />8.Align two protein sequences using a dynamic programming method in Perl<br />9.Randomly generate five 100 AA long protein sequences and store them in a FASTA file<br />10.Create a flat text file database of protein sequences with hash function in Perl</strong><br />
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