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UNIST Bioinformatics course syllabus

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<p><table style="border-collapse: collapse" cellspacing="0" cellpadding="0" border="0"> <tbody> <tr style="height: 16.5pt"> <td style="border-top: rgb(0,0,0); height: 16.5pt; border-right: rgb(0,0,0); width: 505.5pt; border-bottom: rgb(0,0,0); padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0); padding-right: 1.4pt; background-color: transparent" width="843" colspan="7"> <div style="text-align: center; line-height: 160%; -ms-word-break: keep-all" align="center"><b><span style="font-size: 14pt; color: black; line-height: 160%">Syllabus</span></b></div> </td> </tr> <tr style="height: 18.75pt"> <td style="border-top: rgb(0,0,0) 0px; height: 18.75pt; border-right: rgb(0,0,0) 0px; width: 255pt<p>&nbsp;</p> <table border="0" cellpadding="0" cellspacing="0" style="border-collapse:collapse"> <tbody> <tr> <td colspan="7" style="height: 16.5pt; width: 505.5pt; background-color: transparent"> <div style="word-break: keep-all; text-align: center; line-height: 160%"><strong><span style="color:black; font-size:14pt">Syllabus</span></strong></div> </td> </tr> <tr> <td colspan="3" style="height: 18.75pt; width: 255pt; background-color: transparent"> <div style="word-break: keep-all; line-height: 160%"><strong><span style="color:black">Course Information&nbsp; Bioinformatics</span></strong></div> </td> <td colspan="4" style="height: 18.75pt; width: 250.5pt; background-color: transparent"> <p><strong><span style="color:black">Instructor Information [[Dugwoo Nam]] &amp; [[Jong Bhak]]</span></strong></p> </td
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</p><div style="line-height: 160%; -ms-word-break: keep-all; line-height: 160%">&nbsp;</div> <div style="line-height: 160%; -ms-word-break: keep-all; line-height: 160%"><span style="color:black; font-size: 12pt; color: black; line-height: 160%">Weekly Schedule</span></div> <p>&nbsp;</p> <table styleborder="border-collapse: collapse0" cellspacingcellpadding="0" cellpaddingcellspacing="0" borderstyle="0border-collapse:collapse"> <tbody> <tr > <td style="height: 14.7pt; width: 42.75pt"> <td div style="borderword-topbreak: black 1pt solidkeep-all; heighttext-align: 14.7ptcenter; borderline-rightheight: 160%"><span style="color: black 1pt solid; width">Week</span></div> </td> <td style="height: 4214.75pt7pt; backgroundwidth: rgb(214,214,214); border462pt"> <div style="word-bottombreak: black 1pt solid; paddingkeep-bottom: 1.4ptall; paddingtext-topalign: 1.4ptcenter; paddingline-leftheight: 1.4pt; border-left160%"><span style="color: black 1pt solid; padding-right: 1.4pt; border-image: none" width="71"">Contents</span></div> </td> </tr> <tr> <div td style="text-alignheight: center35.65pt; line-heightwidth: 160%42.75pt; background-ms-color: transparent"> <div style="word-break: keep-all" ; text-align=": center"><span style="color: black; line-height: 160%">01<font size="2">Week</font><//span></div> </td> <td style="border-top: black 1pt solid; height: 1435.7pt; border-right: black 1pt solid65pt; width: 462pt; background: rgb(214,214,214); border-bottomcolor: black 1pt solid; paddingtransparent"> <p style="text-bottomalign: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0">Introduction to Bioinformatics,0Introduction to Microarray,0) 0px; paddingRNA-right: 1.4pt; border-image: none" width="770"seq</p> </td> </tr> <tr> <div td style="text-alignheight: center35.65pt; line-heightwidth: 160%42.75pt; background-ms-color: transparent"> <div style="word-break: keep-all" ; text-align=": center"><span style="color: black; line-height: 160%">02<font size="2">Contents</font></span>/span></div> </td> </tr> <tr td style="height: 35.65pt; width: 462pt; background-color: transparent"> <td style="border-topp>Microarray &amp; gene data analysis I: rgbNormalization, Identification of DEGs (0R language),0,0Gene list analysis with DAVID and STRING(web) 0px; height: 35.65pt; border-right</p> </td> </tr> <tr> <td style="height: black 1pt solid35.65pt; width: 42.75pt; borderbackground-bottomcolor: black 1pt solid; paddingtransparent"> <div style="word-bottombreak: 1.4pt; paddingkeep-top: 1.4ptall; paddingtext-leftalign: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="71center"> <div span style="text-aligncolor: center; -ms-word-break: keep-all" align="centerblack">03</span style="color: black"><font size="2"/div>01 </font></span></divtd> </td> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 462pt; borderbackground-bottomcolor: black 1pt solid; padding-bottom: 1.4pttransparent"> <p>Microarray &amp; padding-topgene data analysis II: 1.4pt; padding-left: 1.4pt; border-left: rgbClustering, (0R,0cluster,0treeview) 0px; padding-right: 1, Dimension Reduction (PCA), survival analysis</p> </td> </tr> <tr> <td style="height: 35.65pt; width: 42.4pt75pt; background-color: transparent" width="770">> <p div style="text-align: left; -ms-word-break: keep-all" ; text-align="left: center"><span style="serifcolor: black">04</span><font size="2">Introduction to Bioinformatics, Introduction to Microarray, RNA-seq</font></span></p/div> </td> </tr> <tr td style="height: 35.65pt; width: 462pt; background-color: transparent"> <td div style="borderline-topheight: rgb(0,0,0) 0px; 115%">Test 1</div> </td> </tr> <tr> <td style="height: 35.65pt; border-right: black 1pt solid; widthwidth: 42.75pt; borderbackground-bottomcolor: black 1pt solid; paddingtransparent"> <div style="word-bottombreak: 1.4pt; paddingkeep-top: 1.4ptall; paddingtext-leftalign: 1.4pt; border-leftcenter"><span style="color: black 1pt solid">05</span></div> </td> <td style="height: 35.65pt; padding-rightwidth: 1.4pt462pt; background-color: transparent; border-image: none" width="71">"> <div p style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: blackleft"><font size="2">02Gene-set and pathway analysis with GSEA, Introduction to classification analysis (SVM)</fontp> </spantd> </divtr> </tdtr> <td style="border-topheight: rgb(0,0,0) 0px35.65pt; heightwidth: 3542.65pt75pt; borderbackground-rightcolor: black 1pt solid; width: 462pt; bordertransparent"> <div style="word-bottombreak: black 1pt solid; paddingkeep-bottom: 1.4ptall; paddingtext-topalign: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="770center"> <p span style="line-heightcolor: 115%black">06</span ></div> </td> <td style="serifheight: 35.65pt; width: 462pt; background-color: transparent"> <font sizediv style="2line-height: 115%">Microarray &amp; gene RNA-seq, ChIP-seq data analysis I: Normalization, Identification of DEGs (R language), Gene list analysis with DAVID and STRING(web)</font></span></pdiv> </td> </tr> <tr style="height: 35.65pt"> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 42.75pt; borderbackground-bottomcolor: black 1pt solid; paddingtransparent"> <div style="word-bottombreak: 1.4pt; paddingkeep-top: 1.4ptall; paddingtext-leftalign: 1.4pt; border-leftcenter"><span style="color: black 1pt solid; padding-right: 1">07</span></div> </td> <td style="height: 35.4pt65pt; width: 462pt; background-color: transparent; border-image: none" width="71"> <div p style="text-align: center; -ms-word-breakleft">Introduction to NCBI databases: keep-all" align="center"data and literature search</p> <span style="color: black"/td> <font size="2">03</font></span></div/tr> </tdtr> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 462pt42.75pt; borderbackground-bottomcolor: black 1pt solid; paddingtransparent"> <div style="word-bottombreak: 1.4pt; paddingkeep-top: 1.4ptall; paddingtext-leftalign: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-center"><span style="color: transparent" width="770black">08</span></div> </td> <p td style="line-height: 115%35.65pt; width: 462pt; background-color: transparent"> <span div style="serifword-break: keep-all; text-align: left"><font sizespan style="2color:black">Microarray &amp; gene data analysis II: Clustering, (R, cluster, treeview), Dimension Reduction (PCA), survival analysis</font>Test 2</span></pdiv> </td> </tr> <tr > <td style="height: 35.65pt"> ; width: 42.75pt; background-color: transparent"> <td div style="borderword-topbreak: rgb(0,0,0) 0pxkeep-all; height: 35.65pt; bordertext-rightalign: black 1pt solid; widthcenter"><span style="color:black">09</span></div> </td> <td style="height: 4235.75pt65pt; border-bottomwidth: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt462pt; background-color: transparent; border-image: none" width="71"> <div style="textword-alignbreak: centerkeep-all; text-ms-word-breakalign: keep-all" align="centerleft"><span style="color: black"><font size="2">04</font>&nbsp;[[Principles of Bioinformatics]]</span></div> </td> </tr> <tr> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 462pt; border-bottom: black 1pt solid; padding-bottom: 142.4pt75pt; paddingbackground-topcolor: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="770"transparent"> <div style="lineword-heightbreak: 115%keep-all; text-align: center"><span style="serifcolor: black"><font size="2">Test 1</font>10</span></div> </td> </tr> <tr td style="height: 35.65pt"> <td ; width: 462pt; background-color: transparent"> <div style="borderword-topbreak: rgb(0,0,0) 0pxkeep-all; height: 35.65pt; bordertext-rightalign: black 1pt solid; width: 42.75pt; border-bottomleft"><span style="color: black 1pt solid">&nbsp; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left[[Bioprogramming]]</span></div> </td> </tr> <tr> <td style="height: 135.4pt65pt; border-leftwidth: black 1pt solid; padding-right: 142.4pt75pt; background-color: transparent; border-image: none" width="71">> <div style="text-align: center; -ms-word-break: keep-all" ; text-align=": center"><span style="color: black"><font size="2">05</font>11</span></div> </td> <td style="border-topheight: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid35.65pt; width: 462pt; borderbackground-bottomcolor: black 1pt solid; paddingtransparent"> <div style="word-bottombreak: 1.4ptkeep-all; paddingtext-topalign: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="770left"> <p span style="text-aligncolor: left; -ms-word-break: keep-all" align="leftblack">&nbsp;[[Genomics]]</span style="serif: "><font size="2"/div>Gene-set and pathway analysis with GSEA, Introduction to classification analysis (SVM) </font></span></ptd> </tdtr> </tr> <tr td style="height: 35.65pt"> <td ; width: 42.75pt; background-color: transparent"> <div style="borderword-topbreak: rgb(0,0,0) 0pxkeep-all; height: 35.65pt; bordertext-rightalign: black 1pt solid; width: 42.75pt; border-bottomcenter"><span style="color: black 1pt solid; padding-bottom">12</span></div> </td> <td style="height: 135.4pt65pt; padding-topwidth: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt462pt; background-color: transparent; border-image: none" width="71"> <div style="text-align: center; -ms-word-break: keep-all" ; text-align="center: left"><span style="color: black">&nbsp;[[Transcriptomics]]<font size="2"/span>06</fontdiv> </spantd> </divtr> </tdtr> <td style="border-topheight: rgb(0,0,0) 0px35.65pt; heightwidth: 3542.65pt75pt; borderbackground-rightcolor: black 1pt solid; width: 462pt; bordertransparent"> <div style="word-bottombreak: black 1pt solid; paddingkeep-bottom: 1.4ptall; paddingtext-topalign: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="770center"> <div span style="line-height: 115%color:black"><span style="serif: "><font size="2">RNA-seq, ChIP-seq data analysis</font>13</span></div> </td> </tr> <tr style=td style="height: 35.65pt; width: 462pt; background-color: transparent"> <td div style="borderword-topbreak: rgb(0,0,0) 0pxkeep-all; height: 35.65pt; bordertext-rightalign: black 1pt solid; width: 42.75pt; border-bottomleft"><span style="color: black 1pt solid">&nbsp; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left[[Proteomics]]</span></div> </td> </tr> <tr> <td style="height: 135.4pt65pt; border-leftwidth: black 1pt solid; padding-right: 142.4pt75pt; background-color: transparent; border-image: none" width="71"> <div style="text-align: center; -ms-word-break: keep-all" ; text-align=": center"><span style="color: black"><font size="2">07</font>14</span></div> </td> <td style="border-topheight: rgb(0,0,0) 0px; height: 3535.65pt; border-right: black 1pt solid; width: 462pt; borderbackground-bottomcolor: black 1pt solid; paddingtransparent"> <div style="word-bottombreak: 1.4ptkeep-all; paddingtext-topalign: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="770left"> <p span style="text-aligncolor: left; -ms-word-break: keep-all" align="leftblack">&nbsp;[[Epigenomics]]</span style="serif: "><font size="2"/div>Introduction to NCBI databases: data and literature search </font></span></ptd> </tdtr> </tr> <tr td style="height: 35.65pt; width: 42.75pt; background-color: transparent"> <td div style="borderword-topbreak: rgb(0,0,0) 0pxkeep-all; height: 35.65pt; bordertext-rightalign: black 1pt solid; width: 42.75pt; border-bottomcenter"><span style="color: black 1pt solid; padding-bottom">15</span></div> </td> <td style="height: 135.4pt65pt; padding-topwidth: 1.4pt462pt; paddingbackground-leftcolor: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="71"> <transparent"> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black"><font size="2">08</font></span></div> </td> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 462pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="770"> <div style="text-align: left; -ms-word-break: keep-all" align="left"><span style="color: black; serif: "><font size="2">Test 2</font></span></div> </td> </tr> <tr style="height: 35.65pt"> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 42.75pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="71"> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black"><font size="2">09</font></span></div> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black"><font size="2">(2015.May 1st</font></span></div> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black"><font size="2">Friday)</font></span></div> </td> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 462pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="770"> <div style="text-align: left; -ms-word-break: keep-all" align="left"><span style="color: black; serif: "><font size="2">&nbsp;[[Principles of Bioinformatics]]</font></span></div> </td> </tr> <tr style="height: 35.65pt"> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 42.75pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="71"> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black"><font size="2">10</font></span></div> </td> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 462pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="770"> <div style="text-align: left; -ms-word-break: keep-all" align="left"><span style="color: black; serif: "><font size="2">&nbsp;[[Bioprogramming]]</font></span></div> </td> </tr> <tr style="height: 35.65pt"> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 42.75pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="71"> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black"><font size="2">11</font></span></div> </td> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 462pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="770"> <div style="text-align: left; -ms-word-break: keep-all" align="left"><span style="color: black; serif: "><font size="2">&nbsp;[[Genomics]]</font></span></div> </td> </tr> <tr style="height: 35.65pt"> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 42.75pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="71"> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black"><font size="2">12</font></span></div> </td> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 462pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="770"> <div style="text-align: left; -ms-word-break: keep-all" align="left"><span style="color: black; serif: "><font size="2">&nbsp;[[Transcriptomics]]</font></span></div> </td> </tr> <tr style="height: 35.65pt"> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 42.75pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="71"> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black"><font size="2">13</font></span></div> </td> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 462pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="770"> <div style="text-align: left; -ms-word-break: keep-all" align="left"><span style="color: black; serif: "><font size="2">&nbsp;[[Proteomics]]</font></span></div> </td> </tr> <tr style="height: 35.65pt"> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 42.75pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="71"> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black"><font size="2">14</font></span></div> </td> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 462pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="770"> <div style="text-align: left; -ms-word-break: keep-all" align="left"><span style="color: black; serif: "><font size="2">&nbsp;[[Epigenomics]]</font></span></div> </td> </tr> <tr style="height: 35.65pt"> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 42.75pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: black 1pt solid; padding-right: 1.4pt; background-color: transparent; border-image: none" width="71"> <div style="text-align: center; -ms-word-break: keep-all" align="center"><span style="color: black"><font size="2">15</font></span></div> </td> <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 462pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="770"> <div style="; text-align: left; -ms-word-break: keep-all" align="left"><span style="color: black; serif: "><font size="2">&nbsp;[[Canceromics and Geromics]]</font></span></div> </td> </tr> </tbody>
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<p>[[UNIST Bioinformatics course]]&nbsp; [http://bioinformatics.ws Bioinformatics.ws]</p> <p>&nbsp;</p> 
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