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Personal genomics, bioinformatics, and variomics

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<div align="left"><strong><span style="FONT-SIZE: 9pt">Human Variome Project (HVP)</span></strong></div>
<p align="left"><span style="FONT-SIZE: 9pt">As an international collaboration, headed by Richard Cotton, HVP was launched in 2006 (<a href="http://humanvariomeproject.org/"><font color="#0000ff">http://humanvariomeproject.org</font></a>) </span><span style="FONT-SIZE: 9pt">(Ring, Kwok et al. 2006)</span><span style="FONT-SIZE: 9pt">. HVP aims to&nbsp;make clinicians who have been working on rare diseases, to work together with molecular biologists and bioinformaticians. Their goal is to link medical information with genotype information. Succinctly this process is called genotype to phenotype mapping. As several full human genome sequences are already available, mapping phenotypes to the full genomes will be the major challenge of biology in the next 20 years.&nbsp;<br />
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</span><strong><span style="FONT-SIZE: 9pt">Asian Variome Project (AVP)</span></strong><span style="FONT-SIZE: 9pt"><br />
Bioinformatics is the key in personal genome projects and variome projects. Bioinformatics is not a set of tools but it is a proper scientific discipline. It regards life as a gigantic information processing phenomenon and tries to map its components and to model the emerging networks of the components. Bioinformatics in 2008 is driving biology into an information science. Most biology researches are now with massive amount of data that cannot be processed by hand. Nearly all the biological research outcomes in the next&nbsp;five years will have some form of high throughput data such as genome sequences, microarray data, proteome analyses, SNPs, epigenome chips, and large scale phenotype mapping. Bioinformatics tools in genomics and variomics can be found from various internet resources. There are various bioinformatics hubs such as NCBI (National Center for Biotechnology Information), EBI (European Bioinformatics Institute), DDBJ (Databank of Japan), and KOBIC.&nbsp;Some&nbsp;others are: Bioinformatics Organization (<a href="http://bioinformatics.org/"><font color="#0000ff">http://Bioinformatics.Org</font></a>), EMBnet (<a href="http://www.embnet.org/"><font color="#0000ff">http://www.embnet.org/</font></a>), and&nbsp;The International Society for Computational Biology (<a href="http://iscb.org/"><font color="#0000ff">http://iscb.org</font></a>). The following are major bioinformatics journals:<br />
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<ul type="disc"> <li style="TEXT-ALIGN: left"><span style="FONT-SIZE: 9pt">Algorithms in <li style="TEXT-ALIGN: left"><span style="FONT-SIZE: 9pt">Molecular Biology (http://www.almob.org/)<br /></span></li><li style="TEXT-ALIGN: left"><span style="FONT-SIZE: 9pt">Bioinformatics (http://bioinformatics.oxfordjournals.org/)<br /></span></li><li style="TEXT-ALIGN: left"><span style="FONT-SIZE: 9pt">BMC Bioinformatics (http://www.biomedcentral.com/bmcbioinformatics)<br /></span></li><li style="TEXT-ALIGN: left"><span style="FONT-SIZE: 9pt">Briefings in Bioinformatics (http://bib.oxfordjournals.org/)<br /></span></li><li style="TEXT-ALIGN: left"><span style="FONT-SIZE: 9pt">Genome Research&nbsp;(http://genome.cshlp.org/)<br /></span></li><li style="TEXT-ALIGN: left"><span style="FONT-SIZE: 9pt">Genomics and Informatics (<a href="http://kogowww.orgenominfo.krorg/"><font color="#0000ff">http://kogowww.orgenominfo.krorg</font></a>)<br /></span></li><li style="TEXT-ALIGN: left"><span style="FONT-SIZE: 9pt">The International Journal of Biostatistics (http://www.bepress.com/ijb/)<br /></span></li><li style="TEXT-ALIGN: left"><span style="FONT-SIZE: 9pt">Journal of Computational Biology (http://www.liebertpub.com/Products/Product.aspx?pid=31&amp;AspxAutoDetectCookieSupport=1)<br /></span></li><li style="TEXT-ALIGN: left"><span style="FONT-SIZE: 9pt">Cancer Informatics (http://www.la-press.com/journal.php?pa=description&amp;journal_id=10)<br /></span></li><li style="TEXT-ALIGN: left"><span style="FONT-SIZE: 9pt">Molecular Systems Biology (http://www.nature.com/msb/index.html<br /></span></li><li style="TEXT-ALIGN: left"><span style="FONT-SIZE: 9pt">PLoS Computational Biology (http://www.ploscompbiol.org/home.action)<br /></span></li>
International Journal of Bioinformatics Research and Applications (http://www.inderscience.com/browse/index.php?journalcode=ijbra)<br />
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</span><strong><span style="FONT-SIZE: 9pt">Sequencing DNA, Metagenomics, and Ecogenomics</span></strong><span style="FONT-SIZE: 9pt"><br />
Next generation sequencing methods are not only mapping genomes. They can be used to map the environment. It is called ecogenomics. Environment to humans can be various microbial, plant, and animal interactions around us. Especially, microbial interaction is critical to our health. Gut bacteria are natural environment to us. Metagenomics is a methodology that sequences the whole set of microbes in our food tract. Researchers are realizing that human genome is complemented by such environmental genomes. A new term, 'ecogenomics' is now used to describe these concepts. Metagenomics and ecogenomics are for mapping the variation of environmental genetic factors.<br />
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