Homework of week1-1

Subject : Learn Perl programming language and learn bioinformatics using it.

1. Install and Learn BioPerl

Learn principle of perl

https://qntm.org/files/perl/perl_kr.html

install perl and editor(Padre the Perl IDE)

https://www.youtube.com/watch?time_continue=152&v=R05XpUH876I

 

2.Make a Perl program translating 'all' combinations of triple bases into amino acids

 

3.Pick 5 protein sequences and predict their secondary structures using available prediction programs
4.Open and re-write one FASTA file containing one protein sequence of TERT
5.Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file
6.Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file
7.In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc
8.Align two protein sequences using a dynamic programming method in Perl
9.Randomly generate five 100 AA long protein sequences and store them in a FASTA file
10.Create a flat text file database of protein sequences with hash function in Perl