Genome sequence mapping algorithms
Bioinformatics resources for the next-generation sequencing technology
Eland(Efficient Local Alignment of Nucleotide Data)
RMAP: A Program for mapping Solexa reads
SHRiMP-SHort Read Mapping Package
Maq: Mapping and Assembly with Qualities
SOAP-Short Oligonucleotide Analysis Package
SSAHA2(Sequence Search and Alignment by Hashing Algorithm)