Homo sapiens histone H3

From Biolecture.org

>Perl Code of histone H3

 

[DNA sequence]

ATGGCTCGTACTAAACAGACAGCTCGGAAATCCACCGGCGGTAAAGCGCCACGCAAGCAGCTGGCTACCAAGGCTGCTCGCAAGAGCGCGCCGGCTACCGGGGGCGTGAAAAAGCCTCACCGTTACCGCCC

GGGCACTGTGGCTCTGCGCGAGATCCGCCGCTACCAAAAGTCGACCGAGTTGCTGATTCGGAAGCTGCCGTTCCAGCGCTTGGTGCGAGAAATCGCCCAAGACTTCAAGACCGATCTTCGATTCCAGAGCTC

GGCGGTGATGGCGCTGCAGGAGGCTTGTGAGGCCTACTTGGTAGGGCTCTTTGAGGACACAAACCTTTGCGCCATCCATGCTAAGCGAGTGACTATTATGCCCAAAGACATCCAGCTCGCTCGCCGCATTCGCG

GAGAAGCGTAA

 

[Amino acid sequence]

MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGEA

 

[Second structure]

http://www.compbio.dundee.ac.uk/jpred4/results/jp_NILCv4u/jp_NILCv4u.results.html

Simple result : (H=alpha helix E=beta sheet)

---------------------------------------------HHHHHHHHHH------------HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH-----E---HHHHHHHHH----

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H.W.1