Programing - homework

+ Install and learn bioperl

+ Make a perl grogram translating 'all' combinations of triple bases into amino acids

+ Pick 5 protein sequences and predict their secondary structures using available prediction programs

+ Open and re-write one FASTA file containing one protein sequence of TERT

+ Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file

+ In a multi-sequence FASTA file, produce statistics such as sequenec number, average seq length, GC content, AT content. etc

+ Align two protein sequence using a dynamic programming method in Perl

+ Randomly generate five 100 AA long protein sequences and store them in a FASTA file

+ Create a flat text file database of protein sequences with hash function in Perl

 

 

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