Homework
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Revision as of 21:00, 16 May 2016 by imported>Yeong Jae Kim (Created page with "<p><strong>1. Learn <a href="http://biolecture.org/index.php/Perl" title="Perl">Perl</a> programming language and learn bioinformatics using it.</strong></p> <p> ...")
1. Learn Perl programming language and learn bioinformatics using it.
- Install and Learn BioPerl
- Make a Perl program translating 'all' combinations of triple bases into amino acids
- Pick 5 protein sequences and predict their secondary structures using available prediction programs
- Open and re-write one FASTA file containing one protein sequence of TERT
- Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file
- Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file
- In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc
- Align two protein sequences using a dynamic programming method in Perl
- Randomly generate five 100 AA long protein sequences and store them in a FASTA file
- Create a flat text file database of protein sequences with hash function in Perl
