Homo sapiens Checkpoint kinase CHK1

From Biolecture.org
Revision as of 15:03, 26 May 2016 by imported>위민우

>Perl Code of Checkpoint kinase CHK1

 

[DNA sequence]

ATGGCAGTGCCCTTTGTGGAAGACTGGGACTTGGTGCAAACCCTGGGAGAAGGTGCCTATGGAGAAGTTCAACTTGCTGTGAATAGAGTAACTGAAGAAGCAGTCGCAGTGAAGATTGTAGA

TATGAAGCGTGCCGTAGACTGTCCAGAAAATATTAAGAAAGAGATCTGTATCAATAAAATGCTAAATCATGAAAATGTAGTAAAATTCTATGGTCACAGGAGAGAAGGCAATATCCAATATTTATTT

CTGGAGTACTGTAGTGGAGGAGAGCTTTTTGACAGAATAGAGCCAGACATAGGCATGCCTGAACCAGATGCTCAGAGATTCTTCCATCAACTCATGGCAGGGGTGGTTTATCTGCATGGTATTG

GAATAACTCACAGGGATATTAAACCAGAAAATCTTCTGTTGGATGAAAGGGATAACCTCAAAATCTCAGACTTTGGCTTGGCAACAGTATTTCGGTATAATAATCGTGAGCGTTTGTTGAACAAGA

TGTGTGGTACTTTACCATATGTTGCTCCAGAACTTCTGAAGAGAAGAGAATTTCATGCAGAACCAGTTGATGTTTGGTCCTGTGGAATAGTACTTACTGCAATGCTCGCTGGAGAATTGCCATGG

GACCAACCCAGTGACAGCTGTCAGGAGTATTCTGACTGGAAAGAAAAAAAAACATACCTCAACCCTTGGAAAAAAATCGATTCTGCTCCTCTAGCTCTGCTGCATAAAATCTTAGTTGAGAATCC

ATCAGCAAGAATTACCATTCCAGACATCAAAAAAGATAGATGGTACAACAAACCCCTCAAGAAAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGTGTCAGAGTCTCCCAGTGGATTTTCT

AAGCACATTCAATCCAATTTGGACTTCTCTCCAGTAAACAGTGCTTCTAGTGAAGAAAATGTGAAGTACTCCAGTTCTCAGCCAGAACCCCGCACAGGTCTTTCCTTATGGGATACCAGCCCCTC

ATACATTGATAAATTGGTACAAGGGATCAGCTTTTCCCAGCCCACATGTCCTGATCATATGCTTTTGAATAGTCAGTTACTTGGCACCCCAGGATCCTCACAGAACCCCTGGCAGCGGTTGGTCA

AAAGAATGACACGATTCTTTACCAAATTGGATGCAGACAAATCTTATCAATGCCTGAAAGAGACTTGTGAGAAGTTGGGCTATCAATGGAAGAAAAGTTGTATGAATCAGGTTACTATATCAACAA

CTGATAGGAGAAACAATAAACTCATTTTCAAAGTGAATTTGTTAGAAATGGATGATAAAATATTGGTTGACTTCCGGCTTTCTAAGGGTGATGGATTGGAGTTCAAGAGACACTTCCTGAAGATTA

AAGGGAAGCTGATTGATATTGTGAGCAGCCAGAAGGTTTGGCTTCCTGCCACATGA

 

[Amino acid sequence]

MAVPFVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITH

RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPD

IKKDRWYNKPLKKGAKRPRVTSGGVSESPSGFSKHIQSNLDFSPVNSASSEENVKYSSSQPEPRTGLSLWDTSPSYIDKLVQGISFSQPTCPDHMLLNSQLLGTPGSSQNPWQRLVKRMTRFFTKL

DADKSYQCLKETCEKLGYQWKKSCMNQVTISTTDRRNNKLIFKVNLLEMDDKILVDFRLSKGDGLEFKRHFLKIKGKLIDIVSSQKVWLPAT

 

[Second structure]

http://www.compbio.dundee.ac.uk/jpred4/results/jp_gLEX9iq/jp_gLEX9iq.results.html

Simple result : (H=alpha helix E=beta sheet)

<code>--------<span style="color:#DAA520">EEEEEEE</span>-----<span style="color:#DAA520">EEEEEEEE</span>----<span style="color:#DAA520">EEEEEEEEE</span>-----<span style="color:#FF0000">HHHHHHHHHHHHHHH</span>-----<span style="color:#DAA520">EEEEEEEEE</span>----<span style="color:#DAA520">EEEEEEE</span>-----<span style="color:#FF0000">HHHHHHH</span>-----<span style="color:#FF0000">HHHHHHHHHHHHHHHHHHH</span>----<span style="color:#DAA520">EEE</span>--------------<span style="color:#DAA520">EEEEE</span>--------------<span style="color:#DAA520">EEE</span>-----------<span style="color:#FF0000">HH</span>------------<span style="color:#FF0000">HHHHHHHHHHHH</span>----------<span style="color:#FF0000">HHHHHHHHHH</span>-------------<span style="color:#FF0000">HHHHHHHHHH</span>----------<span style="color:#FF0000">HHHHHH</span>----------------------------------------------------------------------------------------------------------------------------<span style="color:#FF0000">HHHHHHHHHHHHHH</span>----<span style="color:#DAA520">EEE</span>----<span style="color:#DAA520">EEEEEEE</span>-----<span style="color:#DAA520">EEEEEEEEEE</span>----<span style="color:#DAA520">EEEEEEE</span>-----<span style="color:#FF0000">HHHHHHHHHHHHH</span>----<span style="color:#DAA520">EE</span>---------</code>

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H.W.1