Programing - homework

1. Install and learn bioperl

2. Make a perl grogram translating 'all' combinations of triple bases into amino acids

3. Pick 5 protein sequences and predict their secondary structures using available prediction programs

4. Open and re-write one FASTA file containing one protein sequence of TERT

5. Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file

6. In a multi-sequence FASTA file, produce statistics such as sequenec number, average seq length, GC content, AT content. etc

7. Align two protein sequence using a dynamic programming method in Perl

8. Randomly generate five 100 AA long protein sequences and store them in a FASTA file

9. Create a flat text file database of protein sequences with hash function in Perl