Difference between revisions of "DATA extraction from FASTA"
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imported>Seung-hoon Kim (Created page with "<p>FASTA format is an arranged sequence data file.</p> <p>FASTA file starts from > in the first row.</p> <p>This row contains basic information such as sequence ID.</p> <p>...") |
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Revision as of 20:36, 14 June 2016
FASTA format is an arranged sequence data file.
FASTA file starts from > in the first row.
This row contains basic information such as sequence ID.
1. Go to the NCBI (http://www.ncbi.nlm.nih.gov/) , National Center for Biotechnology Information
2. Choose the database that you want and search the information that you want to find
Ex) Database - Gene / Search - Homo sapiens chromosome 2 / Choose what you want to look at
3. Choose FASTA from the 'Go to nucleotide' section
1)Display settings: FASTA
Send to: File
You get a link like this:
http://www.ncbi.nlm.nih.gov/sviewer/viewer.fcgi?tool=portal&sendto=on&log$=seqview&db=nuccore&dopt=fasta&val=51466650&extrafeat=0&maxplex=1
Reference
1) http://seqanswers.com/forums/showthread.php?t=18354
