Homework

1. Learn Perl programming language and learn bioinformatics using it.

 1) Install and Learn Bioperl

 2) Make a perl program 

Make a Perl program translating 'all' combinations of triple bases into amino acids

• Install and Learn BioPerl
• Make a Perl program translating 'all' combinations of triple bases into amino acids
• Pick 5 protein sequences and predict their secondary structures using available prediction programs
• Open and re-write one FASTA file containing one protein sequence of TERT
• Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file
• Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file
• In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc
• Align two protein sequences using a dynamic programming method in Perl
• Randomly generate five 100 AA long protein sequences and store them in a FASTA file
• Create a flat text file database of protein sequences with hash function in Perl