Difference between revisions of "Sounkou Kim"
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<h1> Principles of Bioinformatics</h1> | <h1> Principles of Bioinformatics</h1> | ||
<h1>Bioprogramming</h1> | <h1>Bioprogramming</h1> | ||
| − | <p> Threre are some example that use the word 'Bio Programming' as a technique in genetic engineering related to synthetic biology such as synthesizing or modifying biological object like DNA, proteins, or even cells. <a href="http://www.technologyreview.com/article/404707/bio-programming/">[1]</a><a href="http://aihub.net/bio-programming-hacking-dna-compiling-code-living-systems/">[2]</a> Therefore, to avoid confusion, the word 'Bioprogramming' written without blank would be limitted in meaning as programming in computer used to bioinformatics in 2015 1st semestser Bioinformatics class.</p> | + | <p> Threre are some example that use the word 'Bio Programming' as a technique in genetic engineering related to synthetic biology such as synthesizing or modifying biological object like DNA, proteins, or even cells. <a href="http://www.technologyreview.com/article/404707/bio-programming/">[1]</a><a href="http://aihub.net/bio-programming-hacking-dna-compiling-code-living-systems/">[2]</a> Therefore, to avoid confusion, the word 'Bioprogramming' written without blank would be limitted in meaning as programming in computer used to bioinformatics in 2015 1st semestser Bioinformatics class. Professor Bhak suggested following two examples:</p> |
| + | <ul> | ||
| + | <li>BioPHP</li> | ||
| + | </ul> | ||
| + | <p style="margin-left: 40px;">BioPHP is a package of PHP, with classes for DNA and protein sequence analysis, alignment, database parsing, and othe bioinformatics tools. It is not independent programming language from PHP, but a bunch of add-on tools specialized in bioinformatics.</p> | ||
| + | <ul> | ||
| + | <li>BioPerl</li> | ||
| + | </ul> | ||
| + | <p style="margin-left: 40px;">BioPerl is a collection of Perl modules that facilitate the development of Perl scripts for bioinformatics applications.</p> | ||
| + | <p> As we can found in both examples, bioprogramming does not mean by the original programming language only for bioinformatics, but the use of existing general programming language such as Java<a href="http://www.ijcse.com/docs/INDJCSE11-02-06-087.pdf">[3]</a> or R<a href="http://cran.r-project.org/doc/contrib/Krijnen-IntroBioInfStatistics.pdf">[4]</a> specially for bioinformatics.</p> | ||
<h1>Genomics</h1> | <h1>Genomics</h1> | ||
<h1>Transcriptomics</h1> | <h1>Transcriptomics</h1> | ||
Revision as of 02:22, 8 May 2015
Contents
Principles of Bioinformatics
Bioprogramming
Threre are some example that use the word 'Bio Programming' as a technique in genetic engineering related to synthetic biology such as synthesizing or modifying biological object like DNA, proteins, or even cells. [1][2] Therefore, to avoid confusion, the word 'Bioprogramming' written without blank would be limitted in meaning as programming in computer used to bioinformatics in 2015 1st semestser Bioinformatics class. Professor Bhak suggested following two examples:
- BioPHP
BioPHP is a package of PHP, with classes for DNA and protein sequence analysis, alignment, database parsing, and othe bioinformatics tools. It is not independent programming language from PHP, but a bunch of add-on tools specialized in bioinformatics.
- BioPerl
BioPerl is a collection of Perl modules that facilitate the development of Perl scripts for bioinformatics applications.
As we can found in both examples, bioprogramming does not mean by the original programming language only for bioinformatics, but the use of existing general programming language such as Java[3] or R[4] specially for bioinformatics.
Genomics
Transcriptomics
Proteomics
Epigenomics and Phenomics
Canceromics and Geromics
