Difference between revisions of "Description of Genomics course"
From Biolecture.org
imported>S |
imported>S |
||
| Line 156: | Line 156: | ||
</td> | </td> | ||
<td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684"> | <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684"> | ||
| − | <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> </font><font size="2">What is the Universe? </font></span></div> | + | <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> </font><font size="2">What is the Biological Universe? </font></span></div> |
| + | <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> Mathematics, Physics, Chemistry</font></span></div> | ||
</td> | </td> | ||
</tr> | </tr> | ||
| Line 164: | Line 165: | ||
</td> | </td> | ||
<td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684"> | <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684"> | ||
| − | <div style="text-align: left; margin: 0cm 0cm 8pt; text-indent: 5pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">What is Life?</font></span></div> | + | <div style="text-align: left; margin: 0cm 0cm 8pt; text-indent: 5pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2">What is Life on Earth and beyond?</font></span></div> |
| + | <div style="text-align: left; margin: 0cm 0cm 8pt; text-indent: 5pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> Biochemistry, Biology</font></span></div> | ||
</td> | </td> | ||
</tr> | </tr> | ||
| Line 173: | Line 175: | ||
<td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684"> | <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684"> | ||
<div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> </font><font size="2">What is Science?</font></span></div> | <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> </font><font size="2">What is Science?</font></span></div> | ||
| + | <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> History of Science.</font></span></div> | ||
</td> | </td> | ||
</tr> | </tr> | ||
| Line 181: | Line 184: | ||
<td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684"> | <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684"> | ||
<div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> </font><font size="2">What is Biology? </font></span></div> | <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> </font><font size="2">What is Biology? </font></span></div> | ||
| + | <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> Basic knowledge on biology</font></span></div> | ||
| + | <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> DNA, Proteins</font></span></div> | ||
| + | <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> RNA</font></span></div> | ||
</td> | </td> | ||
</tr> | </tr> | ||
| Line 189: | Line 195: | ||
<td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684"> | <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684"> | ||
<div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> </font><font size="2">What is Information?</font></span></div> | <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> </font><font size="2">What is Information?</font></span></div> | ||
| + | <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> Informatics</font></span></div> | ||
</td> | </td> | ||
</tr> | </tr> | ||
| Line 197: | Line 204: | ||
<td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684"> | <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684"> | ||
<div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> </font><font size="2">What is Programming?</font></span></div> | <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> </font><font size="2">What is Programming?</font></span></div> | ||
| + | <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> Perl, Bioperl</font></span>, Algorithm</div> | ||
</td> | </td> | ||
</tr> | </tr> | ||
| Line 205: | Line 213: | ||
<td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684"> | <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684"> | ||
<div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> </font><font size="2">What is Bioinformatics? </font></span></div> | <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> </font><font size="2">What is Bioinformatics? </font></span></div> | ||
| + | <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> Principles of Bioinformatics</font></span></div> | ||
</td> | </td> | ||
</tr> | </tr> | ||
| Line 213: | Line 222: | ||
<td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684"> | <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684"> | ||
<div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> </font><font size="2">What is Omics?</font></span></div> | <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> </font><font size="2">What is Omics?</font></span></div> | ||
| + | <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> Various omics</font></span></div> | ||
</td> | </td> | ||
</tr> | </tr> | ||
| Line 229: | Line 239: | ||
<td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684"> | <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684"> | ||
<div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> </font><font size="2">What is Evolution?</font></span></div> | <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> </font><font size="2">What is Evolution?</font></span></div> | ||
| + | <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> Darwinian evolution</font></span></div> | ||
</td> | </td> | ||
</tr> | </tr> | ||
| Line 253: | Line 264: | ||
<td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684"> | <td style="border-top: rgb(0,0,0) 0px; height: 35.65pt; border-right: black 1pt solid; width: 410.2pt; border-bottom: black 1pt solid; padding-bottom: 1.4pt; padding-top: 1.4pt; padding-left: 1.4pt; border-left: rgb(0,0,0) 0px; padding-right: 1.4pt; background-color: transparent" width="684"> | ||
<div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> </font><font size="2">What is Aging?</font></span></div> | <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> </font><font size="2">What is Aging?</font></span></div> | ||
| + | <div style="text-align: left; margin: 0cm 0cm 8pt; -ms-word-break: keep-all" align="left"><span style="color: black; line-height: 107%; serif: "><font size="2"> Measuring aging</font></span></div> | ||
</td> | </td> | ||
</tr> | </tr> | ||
Revision as of 21:40, 5 May 2015
Course Description for BME324, Genomics
by Jong Bhak (jongbhak@gmail.com)
Genomics is the new name for genetics that encompasses not only traditional
genetics research and technology topics but also includes information technology, systems biology, high throughput biodata generation, processing, and analyses.
It covers areas such as sequencing, DNA synthesis, and genome writing and editing.
Genomics course requires the students to have been exposed to general
biology, data processing, statistics, mathematics, and computer science.
The genomic research can be largely divided into experimental and informatic
parts. The course will not cover hands-on experiments due to space limitation.
Students who took this subject will be able to understand life in terms of information processing with much knowledge on how to use technologies to solve problems such as curing cancer and aging.
The topics of genomics include:
1. What is life, information, and the universe? (as information processing objects)
2. What is Omics? (as an approach of understanding life)
3. What is 'Big data' in biology?
4. How molecules and cells propagate in the universe?
5. Genome reading and writing
6. Curing Cancer using genomics (Oncomics)
7. Curing Aging using genomics (Geromics)
|
|
|
|
|
|
|
||
|
Text
|
|||||||
|
Category
|
Book
|
|
|||||
|
Title
|
|
||||||
|
Author
|
Arthur M. Lesk,
|
|
|||||
|
ISBN
|
|
|
|||||
|
Remarks
|
Oxford University Press
|
|
|||||
|
Course Reserves Designation
|
|
|
|||||
|
References
|
|||||||
The Atom of Evolution. Genomics & Informatics, December 2004, 2(4):167-173.
Genomic profile analysis of diffuse-type gastric cancers
Genome Biology, 2014
Minke whale genome and aquatic adaptation in cetaceans.
Nature Genetics, 2013. (24th Nov 2013)
Tiger genome and comparative analysis with lion and snow leopard genomes.
Nature Communications, 2013. Sep. 17th.
Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq
BMC Genomics. 2012 Sep 12;13:473. doi: 10.1186/1471-2164-13-473.
Weekly Schedule
|
Week
|
Contents
|
|
01
|
What is the Biological Universe?
Mathematics, Physics, Chemistry
|
|
02
|
What is Life on Earth and beyond?
Biochemistry, Biology
|
|
03
|
What is Science?
History of Science.
|
|
04
|
What is Biology?
Basic knowledge on biology
DNA, Proteins
RNA
|
|
05
|
What is Information?
Informatics
|
|
06
|
What is Programming?
Perl, Bioperl, Algorithm
|
|
07
|
What is Bioinformatics?
Principles of Bioinformatics
|
|
08
|
What is Omics?
Various omics
|
|
09
|
What is Genomics?
|
|
10
|
What is Evolution?
Darwinian evolution
|
|
11
|
What is Sequence?
|
|
12
|
What is Cancer?
|
|
13
|
What is Aging?
Measuring aging
|
|
14
|
Research Report presentation
|
|
15
|
Research Report presentation
|
|
Grading
|
|
|
Research report writing and presentation (100%)
Each week, before, class, students are asked to submit research reports on genomics topics. The final grade will be given by the quality of research reports and presentations (in English) The important points of grading are:
1. Being scientific in reasoning and presenting 2. Critical thinking level 3. Being independent in thinking |
|
|
|
|
