Difference between revisions of "Programing - homework"
From Biolecture.org
imported>SeongEon Park |
imported>SeongEon Park |
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<p><strong>+ Pick 5 protein sequences and predict their secondary structures using available prediction programs</strong></p> | <p><strong>+ Pick 5 protein sequences and predict their secondary structures using available prediction programs</strong></p> | ||
| − | <p><strong>[[ | + | <p><strong>[[+ Open and re-write one FASTA file containing one protein sequence of TERT]]</strong></p> |
<p><strong>+ Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file</strong></p> | <p><strong>+ Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file</strong></p> | ||
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<p><strong>+ Align two protein sequence using a dynamic programming method in Perl</strong></p> | <p><strong>+ Align two protein sequence using a dynamic programming method in Perl</strong></p> | ||
| − | <p><strong>[[ | + | <p><strong>[[+ Randomly generate five 100 AA long protein sequences and store them in a FASTA file]]</strong></p> |
<p><strong>+ Create a flat text file database of protein sequences with hash function in Perl</strong></p> | <p><strong>+ Create a flat text file database of protein sequences with hash function in Perl</strong></p> | ||
Revision as of 02:44, 8 June 2017
+ Install and learn bioperl
+ Make a perl grogram translating 'all' combinations of triple bases into amino acids
+ Pick 5 protein sequences and predict their secondary structures using available prediction programs
+ Open and re-write one FASTA file containing one protein sequence of TERT
+ Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file
+ In a multi-sequence FASTA file, produce statistics such as sequenec number, average seq length, GC content, AT content. etc
+ Align two protein sequence using a dynamic programming method in Perl
+ Randomly generate five 100 AA long protein sequences and store them in a FASTA file
+ Create a flat text file database of protein sequences with hash function in Perl
