Difference between revisions of "Programing - homework"
From Biolecture.org
imported>SeongEon Park |
imported>SeongEon Park |
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| − | <p><strong>[[ | + | <p><strong>[[+ Install and learn bioperl]]</strong></p> |
| − | <p><strong>[[ | + | <p><strong>[[+ Make a perl grogram translating 'all' combinations of triple bases into amino acids]]</strong></p> |
| − | <p><strong>[[ | + | <p><strong>[[+ Pick 5 protein sequences and predict their secondary structures using available prediction programs]]</strong></p> |
| − | <p><strong>[[ | + | <p><strong>[[+ Open and re-write one FASTA file containing one protein sequence of TERT]]</strong></p> |
| − | <p><strong>[[ | + | <p><strong>[[+ Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file]]</strong></p> |
| − | <p><strong>[[ | + | <p><strong>[[+ In a multi-sequence FASTA file, produce statistics such as sequenec number, average seq length, GC content, AT content. etc]]</strong></p> |
| − | <p><strong>[[ | + | <p><strong>[[+ Align two protein sequence using a dynamic programming method in Perl]]</strong></p> |
| − | <p><strong>[[ | + | <p><strong>[[+ Randomly generate five 100 AA long protein sequences and store them in a FASTA file]]</strong></p> |
| − | <p><strong>[[ | + | <p><strong>[[+ Create a flat text file database of protein sequences with hash function in Perl]]</strong></p> |
<p> </p> | <p> </p> | ||
<p> </p> | <p> </p> | ||
Revision as of 01:37, 8 June 2017
+ Make a perl grogram translating 'all' combinations of triple bases into amino acids
+ Open and re-write one FASTA file containing one protein sequence of TERT
+ Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file
+ Align two protein sequence using a dynamic programming method in Perl
+ Randomly generate five 100 AA long protein sequences and store them in a FASTA file
+ Create a flat text file database of protein sequences with hash function in Perl
