Difference between revisions of "3. Pick 5 protein sequences and predict their secondary structures using available prediction programs"
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imported>Jaehyeok Shin (Created page with "<p>'H' - Helix, 'E' - Extended, 'B' - Buried, '-' - other types</p> <p>DSCR1(RCAN1) - Down Syndrome Critical Region 1, Regulator of Cal...") |
imported>Jaehyeok Shin |
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| + | <p>I used Jpred 4 program <a href="http://www.compbio.dundee.ac.uk/jpred4/index.html">http://www.compbio.dundee.ac.uk/jpred4/index.html</a></p> | ||
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<p>'H' - Helix, 'E' - Extended, 'B' - Buried, '-' - other types</p> | <p>'H' - Helix, 'E' - Extended, 'B' - Buried, '-' - other types</p> | ||
Revision as of 10:53, 15 June 2016
I used Jpred 4 program http://www.compbio.dundee.ac.uk/jpred4/index.html
'H' - Helix, 'E' - Extended, 'B' - Buried, '-' - other types
DSCR1(RCAN1) - Down Syndrome Critical Region 1, Regulator of Calcineurin 1
<code>MVYAKFESLFRTYDKDITFQYFKSFKRVRINFSNPFSAADARLQLHKTEFLGKEMKLYFAQTLHIGSSHLAPPNPDKQFLISPPASPPVGWKQVEDATPVINYDLLYAISKLGPGEKYELHAATDTTPSVVVHVCESDQEKEEEEEMERMRRPKPKIIQTRRPEYTPIHLS -HHHHHHHHHH-----EEEEE-----EEEEEE--HHHHHHHHHHH--------EEEEEE-------------------------------EEE---------HHHHHHHHH-------EE--------EEEEEE---------------------E---------------</code>
FMRP - Fragile X syndrome Mental Retardation Protein
<code>MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGYNKDINESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKRAHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIKENSTHFSQPNSTKVQRVLVASSVVAGESQKPELKAWQGMVPFVFVGTKDSIANATVLLDYHLNYLKEVDQLRLERLQIDEQLRQIGASSRPPPNRTDKEKSYVTDDGQGMGRGSRPYRNRGHGRRGPGYTSGTNSEASNASETESDHRDELSDWSLAPTEEERESFLRRGDGRRRGGGGRGQGGRGRGGGFKGNDDHSRTDNRPRNPREAKGRTTDGSLQIRVDCNNERSVHTKTLQNTSSEGSRLRTGKDRNQKKEKPDSVDGQQPLVNGVP ---EEEEEE-----EEEEEEEEE---EEEEEE-------------------------------EEEEEE----------EEEEEEEE----EEEEEE-------EEEEE----------------EEEEEEE--HHHHHHHH-HHHHHHHHH---EEEEEE-----EEEEEE-----EEEEEH-HEEE----HHHHHHHHHHHHHHHHHHHHHHH----EEEEE-----HHHH------HHHHHHH----EEEE------EEEEEE--HHHHHHHHHHHHHHHEEEEE------EEE----HHHHHHH----EEEEEE-------------------HHHHHHHHHHHHHHHHHHH------EEE----------------------------------EEEEEEE--HHHHHHHHHHHHHHHHHHH-HHHHHEE-------------------EE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------</code>
Death associated protein kinase 3
<code>MSTFRQEDVEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRRRNVRGEDSGRKPERRRLKTTRLKEYTIKSHSSLPPNNSYADFERFSKVLEEAAAAEEGLRELQRSRRLCHEDVEALAAIYEEKEAWYREESDSLGQDLRRLRQELLKTEALKRQAQEEAKGALLGTSGLKRRFSRLENRYEALAKQVASEMRFVQDLVRALEQEKLQGVECGLR ------------EEEEEEEEE---EEEEEEEE----EEEEEEEEE--------HHHHHHHHHHHHHHHHH-----EEEEEEEE----EEEEEEEE----HHHHHHHH-----HHHHHHHHHHHHHHHHHHHH---EEE-----EEEE---------EEEEE---EEEE----EEEEE------HHHHHH----------HHHHHHHHHHHHH---------HHHHHHHHH---------------HHHHHHHHHHH---------HHHHHH---------------------------------------------------------------------HHHHHH------------HHHH-----------HHHHHHHHH-----HHHHHH---------------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-----------</code>
Calcineurin
<code>MGVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE --EEEEEEEE-----------EEEEEEEEEE----EEEE------EEEEEE----HHHHHHHHH-------EEEEEE--------------------EEEEEEEEE--</code>
Fc region of Immunoglobluin G
