Difference between revisions of "Homo sapiens Ubiquitin Specific Peptidase 1(USP1)"
imported>위민우 |
imported>위민우 |
||
| Line 64: | Line 64: | ||
<p>[Second structure]</p> | <p>[Second structure]</p> | ||
| + | |||
| + | <p>http://www.compbio.dundee.ac.uk/jpred4/results/jp_9ABqemo/jp_9ABqemo.results.html</p> | ||
<p>Simple result : (<span style="color:#FF0000">H</span>=alpha helix <span style="color:#DAA520">E</span>=beta sheet)</p> | <p>Simple result : (<span style="color:#FF0000">H</span>=alpha helix <span style="color:#DAA520">E</span>=beta sheet)</p> | ||
| − | <p> | + | <p><code>---------------------------------<span style="color:#DAA520">EE</span>--------------------------------------------<span style="color:#DAA520">EEEEE</span>-----<span style="color:#FF0000">HHHHHHHHHHH</span>----<span style="color:#FF0000">HHHHH</span>--------------------------------<span style="color:#FF0000">HHHHHHHHHHHHHHHHHHHHHHH</span>---------------<span style="color:#FF0000">HHHHHHHHHH</span>---------<span style="color:#FF0000">HHHHHHHHHHHHHHHHHHH</span>-------------------------------------------------------------------------------------------------------------------------------------------<span style="color:#DAA520">EEEEE</span><span style="color:#FF0000">HHHHH</span>----------------------------------------------------------<span style="color:#FF0000">HHHH</span>---<span style="color:#DAA520">EEEEEEEEE</span>------<span style="color:#DAA520">E</span>----------------------------------------<span style="color:#FF0000">HHHHH</span>--------------------<span style="color:#FF0000">HHHHHHHHHHHHHHHHHHHHHHHHH</span>----<span style="color:#DAA520">EEE</span>---------------------------------<span style="color:#DAA520">EEEEEEE</span>--------<span style="color:#DAA520">EEEEEEE</span>------------<span style="color:#DAA520">EEEE</span>--<span style="color:#DAA520">EEEE</span>-----<span style="color:#FF0000">HH</span>--<span style="color:#FF0000">H</span><span style="color:#DAA520">EEEEE</span>--------------------------------------------------------------------------------------------------------------------------------------------<span style="color:#FF0000">HHHHHHH</span>--</code></p> |
<p>__________________________________________________________________________________________________________________________________________________________________________________________</p> | <p>__________________________________________________________________________________________________________________________________________________________________________________________</p> | ||
<p>[[H.W.1]]</p> | <p>[[H.W.1]]</p> | ||
Latest revision as of 15:46, 27 May 2016
>Perl Code of Ubiquitin Specific Peptidase 1(USP1)
[DNA sequence]
ATGCCTGGTGTCATACCTAGTGAAAGTAATGGACTTTCAAGAGGTAGCCCTTCAAAGAAAAACAGACTTTCCTTAAAGTTTTTTCAGAAAAAGGAAACTAAGAGAGCTTTGGATTTCACAGATTC
TCAAGAAAATGAAGAAAAAGCTTCTGAATATAGAGCATCTGAAATTGATCAAGTTGTTCCTGCAGCACAGTCTTCACCTATAAACTGTGAGAAGAGAGAAAACTTGTTACCATTTGTGGGACTGA
ATAATCTCGGCAATACTTGCTATCTTAATAGTATACTTCAGGTATTATATTTTTGTCCCGGTTTTAAATCTGGAGTAAAGCACTTATTTAATATTATTTCAAGGAAGAAAGAAGCTCTAAAGGATGAAG
CCAATCAAAAAGACAAGGGAAATTGCAAAGAAGATTCTTTGGCAAGTTATGAATTGATATGCAGTTTACAGTCCTTAATCATTTCGGTTGAACAGCTCCAGGCTAGTTTTCTCTTAAATCCAGAGA
AATATACTGATGAACTTGCCACTCAGCCAAGGCGACTGCTTAACACACTGAGGGAACTCAACCCTATGTATGAAGGATATCTACAGCATGATGCACAGGAAGTATTACAATGTATTTTGGGAAACA
TTCAAGAAACATGCCAACTCCTAAAAAAAGAAGAAGTAAAAAATGTGGCAGAATTACCTACTAAGGTAGAAGAAATACCTCATCCGAAAGAGGAAATGAATGGTATTAACAGCATAGAGATGGAC
AGTATGAGGCATTCTGAAGACTTTAAAGAGAAACTCCCAAAAGGAAATGGGAAAAGAAAAAGTGACACTGAATTTGGTAACATGAAGAAAAAAGTTAAATTATCCAAGGAACACCAGTCATTGG
AAGAGAACCAGAGACAAACTAGATCAAAAAGAAAAGCTACAAGTGATACATTAGAGAGTCCTCCTAAAATAATTCCCAAGTATATTTCTGAAAATGAGAGTCCAAGACCCTCACAAAAGAAATCA
AGAGTTAAAATAAATTGGTTAAAGTCTGCAACTAAGCAACCCAGCATTCTTTCTAAATTTTGTAGTCTGGGAAAAATAACAACAAACCAAGGAGTCAAAGGACAATCTAAAGAAAATGAATGTGAT
CCTGAAGAGGACTTGGGGAAGTGTGAAAGTGATAACACAACTAATGGTTGTGGACTTGAATCTCCAGGAAATACTGTTACACCTGTAAATGTTAATGAAGTTAAACCCATAAACAAAGGTGAAG
AACAAATTGGTTTTGAGCTAGTGGAGAAATTATTTCAAGGTCAGCTGGTATTAAGGACGCGTTGCTTGGAATGTGAAAGTTTAACAGAAAGAAGAGAAGATTTTCAAGACATCAGTGTGCCAGT
ACAAGAAGATGAGCTTTCCAAAGTAGAGGAGAGTTCTGAAATTTCTCCAGAGCCAAAAACAGAAATGAAGACCCTGAGATGGGCAATTTCACAATTTGCTTCAGTAGAAAGGATTGTAGGAGA
AGATAAATATTTCTGTGAAAACTGCCATCATTATACTGAAGCTGAACGAAGTCTTTTGTTTGACAAAATGCCTGAAGTTATAACTATTCATTTGAAGTGCTTTGCTGCTAGTGGTTTGGAGTTTGAT
TGTTATGGTGGTGGACTTTCCAAGATCAACACTCCTTTATTGACACCTCTTAAATTGTCACTAGAAGAATGGAGCACAAAGCCAACTAACGACAGCTATGGATTATTTGCGGTTGTGATGCATAGT
GGCATTACAATTAGTAGTGGGCATTACACTGCTTCTGTTAAAGTCACTGACCTTAACAGTTTAGAACTAGATAAAGGAAATTTTGTGGTTGACCAAATGTGTGAAATAGGTAAGCCAGAACCATTG
AATGAGGAGGAAGCAAGGGGTGTGGTTGAGAATTATAATGATGAAGAAGTGTCAATTAGAGTTGGTGGAAATACACAGCCAAGTAAAGTTTTGAACAAAAAAAATGTAGAAGCTATTGGACTTC
TTGGAGGACAAAAGAGCAAAGCAGATTATGAGCTATACAACAAAGCCTCTAATCCTGATAAGGTTGCTAGTACAGCGTTTGCTGAAAATAGAAATTCTGAGACTAGTGATACTACTGGGACCCAT
GAATCTGATAGAAACAAGGAATCCAGTGACCAAACAGGCATTAATATTAGTGGATTTGAGAACAAAATTTCATACGTAGTGCAAAGCTTAAAGGAGTATGAGGGGAAGTGGTTGCTTTTTGATGA
TTCTGAAGTCAAAGTTACTGAAGAGAAGGACTTTCTGAATTCTCTTTCCCCTTCTACATCTCCTACTTCTACTCCTTACTTGCTATTTTATAAGAAATTATAG
[Amino acid sequence]
MPGVIPSESNGLSRGSPSKKNRLSLKFFQKKETKRALDFTDSQENEEKASEYRASEIDQVVPAAQSSPINCEKRENLLPFVGLNNLGNTCYLNSILQVLYFCPGFKSGVKHLFNIISRKKEALKDEANQ
KDKGNCKEDSLASYELICSLQSLIISVEQLQASFLLNPEKYTDELATQPRRLLNTLRELNPMYEGYLQHDAQEVLQCILGNIQETCQLLKKEEVKNVAELPTKVEEIPHPKEEMNGINSIEMDSMRHSED
FKEKLPKGNGKRKSDTEFGNMKKKVKLSKEHQSLEENQRQTRSKRKATSDTLESPPKIIPKYISENESPRPSQKKSRVKINWLKSATKQPSILSKFCSLGKITTNQGVKGQSKENECDPEEDLGKCE
SDNTTNGCGLESPGNTVTPVNVNEVKPINKGEEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDKYFCENCHHYTE
AERSLLFDKMPEVITIHLKCFAASGLEFDCYGGGLSKINTPLLTPLKLSLEEWSTKPTNDSYGLFAVVMHSGITISSGHYTASVKVTDLNSLELDKGNFVVDQMCEIGKPEPLNEEEARGVVENYNDEE
VSIRVGGNTQPSKVLNKKNVEAIGLLGGQKSKADYELYNKASNPDKVASTAFAENRNSETSDTTGTHESDRNKESSDQTGINISGFENKISYVVQSLKEYEGKWLLFDDSEVKVTEEKDFLNSLSPST
SPTSTPYLLFYKKL
[Second structure]
http://www.compbio.dundee.ac.uk/jpred4/results/jp_9ABqemo/jp_9ABqemo.results.html
Simple result : (H=alpha helix E=beta sheet)
---------------------------------EE--------------------------------------------EEEEE-----HHHHHHHHHHH----HHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH-------------------------------------------------------------------------------------------------------------------------------------------EEEEEHHHHH----------------------------------------------------------HHHH---EEEEEEEEE------E----------------------------------------HHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHH----EEE---------------------------------EEEEEEE--------EEEEEEE------------EEEE--EEEE-----HH--HEEEEE--------------------------------------------------------------------------------------------------------------------------------------------HHHHHHH--
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