Difference between revisions of "Homo sapiens Checkpoint kinase CHK1"

From Biolecture.org
imported>위민우
(Created page with "<p>>Perl Code of Checkpoint kinase CHK1</p> <p> </p> <p>[DNA sequence]</p> <p><span style="font-family:arial,helvetica,sans-serif">ATGGCAGTGCCCTTTGTGGAAGACTGGGACTT...")
 
imported>위민우
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<p>[Second structure]</p>
 
<p>[Second structure]</p>
  
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<p>http://www.compbio.dundee.ac.uk/jpred4/results/jp_yBpiZbd/jp_yBpiZbd.results.html</p>
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<p>http://www.compbio.dundee.ac.uk/jpred4/results/jp_gLEX9iq/jp_gLEX9iq.results.html</p>
  
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<p>Simple result&nbsp;: (H=alpha helix&nbsp;E=beta sheet)</p>
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<p>Simple result&nbsp;: (<span style="color:#FF0000">H</span>=alpha helix&nbsp;<span style="color:#DAA520">E</span>=beta sheet)</p>
  
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<p><code>-EEEEE--HHHHHHHHHHHHHHH--EEEEE---EEEEEEE----EEEEEEEE--------E----EEEEE-HHHHHHHHH------EEEEEEE----EEEEEEEE----EEEEEE-------------------EEEEE--HHHHHHHHHH-----EEEEEE----EEEEEEE---EEEEEEE-----------EEE-----EEEEE-HHHHHHHHH------EEEEEE-----EEEEEE-----EEEEEEE---------</code></p>
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<pre>
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<code>--------<span style="color:#DAA520">EEEEEEE</span>-----<span style="color:#DAA520">EEEEEEEE</span>----<span style="color:#DAA520">EEEEEEEEE</span>-----<span style="color:#FF0000">HHHHHHHHHHHHHHH</span>-----<span style="color:#DAA520">EEEEEEEEE</span>----<span style="color:#DAA520">EEEEEEE</span>-----<span style="color:#FF0000">HHHHHHH</span>-----<span style="color:#FF0000">HHHHHHHHHHHHHHHHHHH</span>----<span style="color:#DAA520">EEE</span>--------------<span style="color:#DAA520">EEEEE</span>--------------<span style="color:#DAA520">EEE</span>-----------<span style="color:#FF0000">HH</span>------------<span style="color:#FF0000">HHHHHHHHHHHH</span>----------<span style="color:#FF0000">HHHHHHHHHH</span>-------------<span style="color:#FF0000">HHHHHHHHHH</span>----------<span style="color:#FF0000">HHHHHH</span>----------------------------------------------------------------------------------------------------------------------------<span style="color:#FF0000">HHHHHHHHHHHHHH</span>----<span style="color:#DAA520">EEE</span>----<span style="color:#DAA520">EEEEEEE</span>-----<span style="color:#DAA520">EEEEEEEEEE</span>----<span style="color:#DAA520">EEEEEEE</span>-----<span style="color:#FF0000">HHHHHHHHHHHHH</span>----<span style="color:#DAA520">EE</span>---------</code></pre>
  
 
<p>__________________________________________________________________________________________________________________________________________________________________________________________</p>
 
<p>__________________________________________________________________________________________________________________________________________________________________________________________</p>
  
 
<p>[[H.W.1]]</p>
 
<p>[[H.W.1]]</p>

Revision as of 15:03, 26 May 2016

>Perl Code of Checkpoint kinase CHK1

 

[DNA sequence]

ATGGCAGTGCCCTTTGTGGAAGACTGGGACTTGGTGCAAACCCTGGGAGAAGGTGCCTATGGAGAAGTTCAACTTGCTGTGAATAGAGTAACTGAAGAAGCAGTCGCAGTGAAGATTGTAGA

TATGAAGCGTGCCGTAGACTGTCCAGAAAATATTAAGAAAGAGATCTGTATCAATAAAATGCTAAATCATGAAAATGTAGTAAAATTCTATGGTCACAGGAGAGAAGGCAATATCCAATATTTATTT

CTGGAGTACTGTAGTGGAGGAGAGCTTTTTGACAGAATAGAGCCAGACATAGGCATGCCTGAACCAGATGCTCAGAGATTCTTCCATCAACTCATGGCAGGGGTGGTTTATCTGCATGGTATTG

GAATAACTCACAGGGATATTAAACCAGAAAATCTTCTGTTGGATGAAAGGGATAACCTCAAAATCTCAGACTTTGGCTTGGCAACAGTATTTCGGTATAATAATCGTGAGCGTTTGTTGAACAAGA

TGTGTGGTACTTTACCATATGTTGCTCCAGAACTTCTGAAGAGAAGAGAATTTCATGCAGAACCAGTTGATGTTTGGTCCTGTGGAATAGTACTTACTGCAATGCTCGCTGGAGAATTGCCATGG

GACCAACCCAGTGACAGCTGTCAGGAGTATTCTGACTGGAAAGAAAAAAAAACATACCTCAACCCTTGGAAAAAAATCGATTCTGCTCCTCTAGCTCTGCTGCATAAAATCTTAGTTGAGAATCC

ATCAGCAAGAATTACCATTCCAGACATCAAAAAAGATAGATGGTACAACAAACCCCTCAAGAAAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGTGTCAGAGTCTCCCAGTGGATTTTCT

AAGCACATTCAATCCAATTTGGACTTCTCTCCAGTAAACAGTGCTTCTAGTGAAGAAAATGTGAAGTACTCCAGTTCTCAGCCAGAACCCCGCACAGGTCTTTCCTTATGGGATACCAGCCCCTC

ATACATTGATAAATTGGTACAAGGGATCAGCTTTTCCCAGCCCACATGTCCTGATCATATGCTTTTGAATAGTCAGTTACTTGGCACCCCAGGATCCTCACAGAACCCCTGGCAGCGGTTGGTCA

AAAGAATGACACGATTCTTTACCAAATTGGATGCAGACAAATCTTATCAATGCCTGAAAGAGACTTGTGAGAAGTTGGGCTATCAATGGAAGAAAAGTTGTATGAATCAGGTTACTATATCAACAA

CTGATAGGAGAAACAATAAACTCATTTTCAAAGTGAATTTGTTAGAAATGGATGATAAAATATTGGTTGACTTCCGGCTTTCTAAGGGTGATGGATTGGAGTTCAAGAGACACTTCCTGAAGATTA

AAGGGAAGCTGATTGATATTGTGAGCAGCCAGAAGGTTTGGCTTCCTGCCACATGA

 

[Amino acid sequence]

MAVPFVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITH

RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPD

IKKDRWYNKPLKKGAKRPRVTSGGVSESPSGFSKHIQSNLDFSPVNSASSEENVKYSSSQPEPRTGLSLWDTSPSYIDKLVQGISFSQPTCPDHMLLNSQLLGTPGSSQNPWQRLVKRMTRFFTKL

DADKSYQCLKETCEKLGYQWKKSCMNQVTISTTDRRNNKLIFKVNLLEMDDKILVDFRLSKGDGLEFKRHFLKIKGKLIDIVSSQKVWLPAT

 

[Second structure]

http://www.compbio.dundee.ac.uk/jpred4/results/jp_gLEX9iq/jp_gLEX9iq.results.html

Simple result : (H=alpha helix E=beta sheet)

<code>--------<span style="color:#DAA520">EEEEEEE</span>-----<span style="color:#DAA520">EEEEEEEE</span>----<span style="color:#DAA520">EEEEEEEEE</span>-----<span style="color:#FF0000">HHHHHHHHHHHHHHH</span>-----<span style="color:#DAA520">EEEEEEEEE</span>----<span style="color:#DAA520">EEEEEEE</span>-----<span style="color:#FF0000">HHHHHHH</span>-----<span style="color:#FF0000">HHHHHHHHHHHHHHHHHHH</span>----<span style="color:#DAA520">EEE</span>--------------<span style="color:#DAA520">EEEEE</span>--------------<span style="color:#DAA520">EEE</span>-----------<span style="color:#FF0000">HH</span>------------<span style="color:#FF0000">HHHHHHHHHHHH</span>----------<span style="color:#FF0000">HHHHHHHHHH</span>-------------<span style="color:#FF0000">HHHHHHHHHH</span>----------<span style="color:#FF0000">HHHHHH</span>----------------------------------------------------------------------------------------------------------------------------<span style="color:#FF0000">HHHHHHHHHHHHHH</span>----<span style="color:#DAA520">EEE</span>----<span style="color:#DAA520">EEEEEEE</span>-----<span style="color:#DAA520">EEEEEEEEEE</span>----<span style="color:#DAA520">EEEEEEE</span>-----<span style="color:#FF0000">HHHHHHHHHHHHH</span>----<span style="color:#DAA520">EE</span>---------</code>

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H.W.1

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