Difference between revisions of "Homo sapiens Ubiquitin Specific Peptidase 1(USP1)"

From Biolecture.org
imported>위민우
(Created page with "<p>>Perl Code of myosin IE</p> <p> </p> <p>[DNA sequence]</p> <p><span style="font-family:arial,helvetica,sans-serif">ATGCCTGGTGTCATACCTAGTGAAAGTAATGGACTTTCAAGAGGT...")
 
imported>위민우
 
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<p>&gt;[[Perl Code of myosin IE]]</p>
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<p>&gt;[[Perl Code of Ubiquitin Specific Peptidase 1(USP1)]]</p>
  
 
<p>&nbsp;</p>
 
<p>&nbsp;</p>
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<p>[Second structure]</p>
 
<p>[Second structure]</p>
  
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<p>It is too long, so I separate sequences and analyse.</p>
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<p>http://www.compbio.dundee.ac.uk/jpred4/results/jp_9ABqemo/jp_9ABqemo.results.html</p>
  
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<p>http://www.compbio.dundee.ac.uk/jpred4/results/jp_fQEFVex/jp_fQEFVex.results.html</p>
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<p>Simple result&nbsp;: (<span style="color:#FF0000">H</span>=alpha helix&nbsp;<span style="color:#DAA520">E</span>=beta sheet)</p>
  
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<p>http://www.compbio.dundee.ac.uk/jpred4/results/jp_M7yc4W5/jp_M7yc4W5.results.html</p>
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<p><code>---------------------------------<span style="color:#DAA520">EE</span>--------------------------------------------<span style="color:#DAA520">EEEEE</span>-----<span style="color:#FF0000">HHHHHHHHHHH</span>----<span style="color:#FF0000">HHHHH</span>--------------------------------<span style="color:#FF0000">HHHHHHHHHHHHHHHHHHHHHHH</span>---------------<span style="color:#FF0000">HHHHHHHHHH</span>---------<span style="color:#FF0000">HHHHHHHHHHHHHHHHHHH</span>-------------------------------------------------------------------------------------------------------------------------------------------<span style="color:#DAA520">EEEEE</span><span style="color:#FF0000">HHHHH</span>----------------------------------------------------------<span style="color:#FF0000">HHHH</span>---<span style="color:#DAA520">EEEEEEEEE</span>------<span style="color:#DAA520">E</span>----------------------------------------<span style="color:#FF0000">HHHHH</span>--------------------<span style="color:#FF0000">HHHHHHHHHHHHHHHHHHHHHHHHH</span>----<span style="color:#DAA520">EEE</span>---------------------------------<span style="color:#DAA520">EEEEEEE</span>--------<span style="color:#DAA520">EEEEEEE</span>------------<span style="color:#DAA520">EEEE</span>--<span style="color:#DAA520">EEEE</span>-----<span style="color:#FF0000">HH</span>--<span style="color:#FF0000">H</span><span style="color:#DAA520">EEEEE</span>--------------------------------------------------------------------------------------------------------------------------------------------<span style="color:#FF0000">HHHHHHH</span>--</code></p>
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<p>http://www.compbio.dundee.ac.uk/jpred4/results/jp_hybwc_M/jp_hybwc_M.results.html</p>
 
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<p>&nbsp;</p>
 
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<p>Simple result&nbsp;: (H=alpha helix&nbsp;E=beta sheet)</p>
 
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<p><code>------EEEE---------------------HHHHHHHHHHHHH----------EEEEE-----------HHHHHHH---------HHHHHHHHHHHHHHH-----EEEEE------HHHHHHHHHHHHHH----------HHHHHHHH-HHHHHHH---------------EEEEEE-----EEEEE----------EEE-------HHHHHHHHH---HHHHHHHH----------------------HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH----EEEE---------HHHHHHHHHH----HHHHHHHHH---EEEEEE---EEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------EE-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHH---------E----------------HHHHHHHHHHH--------------EEEEEE---EEEEE--EE--------HHHHHHHHH----HHH-----------------HHHHHHHHHHHHHHHHH----EEEEEE------------HHHHHHHHHH--HHHHHHHHH--------HHHHHHHHHHH-----------HHHHHHHHHHH-------EEEEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHH---------HHEE-----EEEHHHHHHH-------HEEEH---EEE--------------EEEE--------------HHHHHHHHHH-HHHH----------HHHHH--------------HHHHH-----HHHHHH------------------------------------------------------------------------------------------------------------------------------------------------EEEEEE---------EEE----EEEEEEE----EEEEEE--EEEEE----EE--</code></p>
 
  
 
<p>__________________________________________________________________________________________________________________________________________________________________________________________</p>
 
<p>__________________________________________________________________________________________________________________________________________________________________________________________</p>
  
 
<p>[[H.W.1]]</p>
 
<p>[[H.W.1]]</p>

Latest revision as of 15:46, 27 May 2016

>Perl Code of Ubiquitin Specific Peptidase 1(USP1)

 

[DNA sequence]

ATGCCTGGTGTCATACCTAGTGAAAGTAATGGACTTTCAAGAGGTAGCCCTTCAAAGAAAAACAGACTTTCCTTAAAGTTTTTTCAGAAAAAGGAAACTAAGAGAGCTTTGGATTTCACAGATTC

TCAAGAAAATGAAGAAAAAGCTTCTGAATATAGAGCATCTGAAATTGATCAAGTTGTTCCTGCAGCACAGTCTTCACCTATAAACTGTGAGAAGAGAGAAAACTTGTTACCATTTGTGGGACTGA

ATAATCTCGGCAATACTTGCTATCTTAATAGTATACTTCAGGTATTATATTTTTGTCCCGGTTTTAAATCTGGAGTAAAGCACTTATTTAATATTATTTCAAGGAAGAAAGAAGCTCTAAAGGATGAAG

CCAATCAAAAAGACAAGGGAAATTGCAAAGAAGATTCTTTGGCAAGTTATGAATTGATATGCAGTTTACAGTCCTTAATCATTTCGGTTGAACAGCTCCAGGCTAGTTTTCTCTTAAATCCAGAGA

AATATACTGATGAACTTGCCACTCAGCCAAGGCGACTGCTTAACACACTGAGGGAACTCAACCCTATGTATGAAGGATATCTACAGCATGATGCACAGGAAGTATTACAATGTATTTTGGGAAACA

TTCAAGAAACATGCCAACTCCTAAAAAAAGAAGAAGTAAAAAATGTGGCAGAATTACCTACTAAGGTAGAAGAAATACCTCATCCGAAAGAGGAAATGAATGGTATTAACAGCATAGAGATGGAC

AGTATGAGGCATTCTGAAGACTTTAAAGAGAAACTCCCAAAAGGAAATGGGAAAAGAAAAAGTGACACTGAATTTGGTAACATGAAGAAAAAAGTTAAATTATCCAAGGAACACCAGTCATTGG

AAGAGAACCAGAGACAAACTAGATCAAAAAGAAAAGCTACAAGTGATACATTAGAGAGTCCTCCTAAAATAATTCCCAAGTATATTTCTGAAAATGAGAGTCCAAGACCCTCACAAAAGAAATCA

AGAGTTAAAATAAATTGGTTAAAGTCTGCAACTAAGCAACCCAGCATTCTTTCTAAATTTTGTAGTCTGGGAAAAATAACAACAAACCAAGGAGTCAAAGGACAATCTAAAGAAAATGAATGTGAT

CCTGAAGAGGACTTGGGGAAGTGTGAAAGTGATAACACAACTAATGGTTGTGGACTTGAATCTCCAGGAAATACTGTTACACCTGTAAATGTTAATGAAGTTAAACCCATAAACAAAGGTGAAG

AACAAATTGGTTTTGAGCTAGTGGAGAAATTATTTCAAGGTCAGCTGGTATTAAGGACGCGTTGCTTGGAATGTGAAAGTTTAACAGAAAGAAGAGAAGATTTTCAAGACATCAGTGTGCCAGT

ACAAGAAGATGAGCTTTCCAAAGTAGAGGAGAGTTCTGAAATTTCTCCAGAGCCAAAAACAGAAATGAAGACCCTGAGATGGGCAATTTCACAATTTGCTTCAGTAGAAAGGATTGTAGGAGA

AGATAAATATTTCTGTGAAAACTGCCATCATTATACTGAAGCTGAACGAAGTCTTTTGTTTGACAAAATGCCTGAAGTTATAACTATTCATTTGAAGTGCTTTGCTGCTAGTGGTTTGGAGTTTGAT

TGTTATGGTGGTGGACTTTCCAAGATCAACACTCCTTTATTGACACCTCTTAAATTGTCACTAGAAGAATGGAGCACAAAGCCAACTAACGACAGCTATGGATTATTTGCGGTTGTGATGCATAGT

GGCATTACAATTAGTAGTGGGCATTACACTGCTTCTGTTAAAGTCACTGACCTTAACAGTTTAGAACTAGATAAAGGAAATTTTGTGGTTGACCAAATGTGTGAAATAGGTAAGCCAGAACCATTG

AATGAGGAGGAAGCAAGGGGTGTGGTTGAGAATTATAATGATGAAGAAGTGTCAATTAGAGTTGGTGGAAATACACAGCCAAGTAAAGTTTTGAACAAAAAAAATGTAGAAGCTATTGGACTTC

TTGGAGGACAAAAGAGCAAAGCAGATTATGAGCTATACAACAAAGCCTCTAATCCTGATAAGGTTGCTAGTACAGCGTTTGCTGAAAATAGAAATTCTGAGACTAGTGATACTACTGGGACCCAT

GAATCTGATAGAAACAAGGAATCCAGTGACCAAACAGGCATTAATATTAGTGGATTTGAGAACAAAATTTCATACGTAGTGCAAAGCTTAAAGGAGTATGAGGGGAAGTGGTTGCTTTTTGATGA

TTCTGAAGTCAAAGTTACTGAAGAGAAGGACTTTCTGAATTCTCTTTCCCCTTCTACATCTCCTACTTCTACTCCTTACTTGCTATTTTATAAGAAATTATAG

 

[Amino acid sequence]

MPGVIPSESNGLSRGSPSKKNRLSLKFFQKKETKRALDFTDSQENEEKASEYRASEIDQVVPAAQSSPINCEKRENLLPFVGLNNLGNTCYLNSILQVLYFCPGFKSGVKHLFNIISRKKEALKDEANQ

KDKGNCKEDSLASYELICSLQSLIISVEQLQASFLLNPEKYTDELATQPRRLLNTLRELNPMYEGYLQHDAQEVLQCILGNIQETCQLLKKEEVKNVAELPTKVEEIPHPKEEMNGINSIEMDSMRHSED

FKEKLPKGNGKRKSDTEFGNMKKKVKLSKEHQSLEENQRQTRSKRKATSDTLESPPKIIPKYISENESPRPSQKKSRVKINWLKSATKQPSILSKFCSLGKITTNQGVKGQSKENECDPEEDLGKCE

SDNTTNGCGLESPGNTVTPVNVNEVKPINKGEEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDKYFCENCHHYTE

AERSLLFDKMPEVITIHLKCFAASGLEFDCYGGGLSKINTPLLTPLKLSLEEWSTKPTNDSYGLFAVVMHSGITISSGHYTASVKVTDLNSLELDKGNFVVDQMCEIGKPEPLNEEEARGVVENYNDEE

VSIRVGGNTQPSKVLNKKNVEAIGLLGGQKSKADYELYNKASNPDKVASTAFAENRNSETSDTTGTHESDRNKESSDQTGINISGFENKISYVVQSLKEYEGKWLLFDDSEVKVTEEKDFLNSLSPST

SPTSTPYLLFYKKL

 

[Second structure]

http://www.compbio.dundee.ac.uk/jpred4/results/jp_9ABqemo/jp_9ABqemo.results.html

Simple result : (H=alpha helix E=beta sheet)

---------------------------------EE--------------------------------------------EEEEE-----HHHHHHHHHHH----HHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH-------------------------------------------------------------------------------------------------------------------------------------------EEEEEHHHHH----------------------------------------------------------HHHH---EEEEEEEEE------E----------------------------------------HHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHH----EEE---------------------------------EEEEEEE--------EEEEEEE------------EEEE--EEEE-----HH--HEEEEE--------------------------------------------------------------------------------------------------------------------------------------------HHHHHHH--

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H.W.1

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