Difference between revisions of "Homo sapiens P53"

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imported>위민우
 
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<p><span style="font-size:14px"><span style="font-family:arial,helvetica,sans-serif">&gt;[[Perl Code of P53]]</span></span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">&gt;[[Perl Code of P53]]</span></span></p>
  
 
<p>&nbsp;</p>
 
<p>&nbsp;</p>
  
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<p><span style="font-size:14px"><span style="font-family:arial,helvetica,sans-serif">[DNA sequence]</span></span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">[DNA sequence]</span></span></p>
  
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<p><span style="font-size:14px"><span style="font-family:arial,helvetica,sans-serif">ATGGAGGAGCCGCAGTCAGATCCTAGCGTCGAGCCCCCTCTGAGTCAGGAAACATTTTCAGACCTATGGAAACTACTTCCTGAAAACAACGTTCTGTCCCCCTTGCCGTCCCAA</span></span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">ATGGAGGAGCCGCAGTCAGATCCTAGCGTCGAGCCCCCTCTGAGTCAGGAAACATTTTCAGACCTATGGAAACTACTTCCTGAAAACAACGTTCTGTCCCCCTTGCCGTCCCAA</span></span></p>
  
−
<p><span style="font-size:14px"><span style="font-family:arial,helvetica,sans-serif">GCAATGGATG</span></span><span style="font-family:arial,helvetica,sans-serif; font-size:14px; line-height:1.6">ATTTGATGCTGTCCCCGGACGATATTGAACAATGGTTCACTGAAGACCCAGGTCCAGATGAAGCTCCCAGAATGCCAGAGGCTGCTCCCCGCGTGGCCCCTGC</span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">GCAATGGATG</span><span style="font-family:arial,helvetica,sans-serif">ATTTGATGCTGTCCCCGGACGATATTGAACAATGGTTCACTGAAGACCCAGGTCCAGATGAAGCTCCCAGAATGCCAGAGGCTGCTCCCCGCGTGGCCCCTGC</span></span></p>
  
−
<p><span style="font-family:arial,helvetica,sans-serif; font-size:14px; line-height:1.6">ACCAGCAGCTCCTACACCGG</span><span style="font-size:14px"><span style="font-family:arial,helvetica,sans-serif">CGGCCCCTGCACCAGCCCC</span><span style="font-family:arial,helvetica,sans-serif; line-height:1.6">CTCCTGGCCCCTGTCATCTTCTGTCCCTTCCCAGAAAACCTACCAGGGCAGCTACGGTTTCCGTCTGGGCTTCT</span></span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">ACCAGCAGCTCCTACACCGGCGGCCCCTGCACCAGCCCCCTCCTGGCCCCTGTCATCTTCTGTCCCTTCCCAGAAAACCTACCAGGGCAGCTACGGTTTCCGTCTGGGCTTCT</span></span></p>
  
−
<p><span style="font-size:14px"><span style="font-family:arial,helvetica,sans-serif; line-height:1.6">TGCATTCTGGGACAGCCAAGTCTGTGACTT</span></span><span style="font-family:arial,helvetica,sans-serif; font-size:14px; line-height:1.6">GCACGTACTCCCCTGCCCTCAACAAGATGTTTTGCCAACTGGCCAAGACCTGCCCTGTGCAGCTGTGGGTTGATTCCACACCC</span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">TGCATTCTGGGACAGCCAAGTCTGTGACTT</span><span style="font-family:arial,helvetica,sans-serif">GCACGTACTCCCCTGCCCTCAACAAGATGTTTTGCCAACTGGCCAAGACCTGCCCTGTGCAGCTGTGGGTTGATTCCACACCC</span></span></p>
  
−
<p><span style="font-family:arial,helvetica,sans-serif; font-size:14px; line-height:1.6">CCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGC</span><span style="font-size:14px"><span style="font-family:arial,helvetica,sans-serif">AGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACC</span><span style="font-family:arial,helvetica,sans-serif; line-height:1.6">ATGAGCGCTGCTCAGATAGCGATGGTCTGG</span></span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">CCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGATGGTCTGG</span></span></p>
  
−
<p><span style="font-size:14px"><span style="font-family:arial,helvetica,sans-serif; line-height:1.6">CCCCTCCTCAGCATCTTATCCGAGTGGAAGGAAATTTGCGTGTGGAGTATT</span></span><span style="font-family:arial,helvetica,sans-serif; font-size:14px; line-height:1.6">TGGATGACAGAAACACTTTTCGACATAGTGTGGTGGTGCCCTATGAGCCGCCTGAGGTTGGCT</span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">CCCCTCCTCAGCATCTTATCCGAGTGGAAGGAAATTTGCGTGTGGAGTATT</span><span style="font-family:arial,helvetica,sans-serif">TGGATGACAGAAACACTTTTCGACATAGTGTGGTGGTGCCCTATGAGCCGCCTGAGGTTGGCT</span></span></p>
  
−
<p><span style="font-family:arial,helvetica,sans-serif; font-size:14px; line-height:1.6">CTGACTGTACCACCATCCACTACAACTACATGTGTAACAGTTCCTGCATGGGCGGCATGAA</span><span style="font-size:14px"><span style="font-family:arial,helvetica,sans-serif">CCGGAGGCCCATCCTCACCATCATCACACTGGAAGACTCCAGTGGTAATCTACT</span></span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">CTGACTGTACCACCATCCACTACAACTACATGTGTAACAGTTCCTGCATGGGCGGCATGAACCGGAGGCCCATCCTCACCATCATCACACTGGAAGACTCCAGTGGTAATCTACT</span></span></p>
  
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<p><span style="font-size:14px"><span style="font-family:arial,helvetica,sans-serif">GGGACGGAA</span><span style="font-family:arial,helvetica,sans-serif; line-height:1.6">CAGCTTTGAGGTGCATGTTTGTGCCTGTCCTGGGAGAGACCGGCGCACAGAGGAAGAGA</span></span><span style="font-family:arial,helvetica,sans-serif; font-size:14px; line-height:1.6">ATCTCCGCAAGAAAGGGGAGCCTCACCACGAGCTGCCCCCAGG</span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">GGGACGGAACAGCTTTGAGGTGCATGTTTGTGCCTGTCCTGGGAGAGACCGGCGCACAGAGGAAGAGA</span><span style="font-family:arial,helvetica,sans-serif">ATCTCCGCAAGAAAGGGGAGCCTCACCACGAGCTGCCCCCAGG</span></span></p>
  
−
<p><span style="font-family:arial,helvetica,sans-serif; font-size:14px; line-height:1.6">GAGCACTAAGCGAGCACTGTCCAACAACACCAGCTCCTCTCCCCAGCCAAAGAAGAAACCACTGGATGGAGAATATTTC</span><span style="font-size:14px"><span style="font-family:arial,helvetica,sans-serif">ACCCTTCAGATCCGTGGGCGTGAGCGCTTCGAGAT</span></span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">GAGCACTAAGCGAGCACTGTCCAACAACACCAGCTCCTCTCCCCAGCCAAAGAAGAAACCACTGGATGGAGAATATTTCACCCTTCAGATCCGTGGGCGTGAGCGCTTCGAGAT</span></span></p>
  
−
<p><span style="font-size:14px"><span style="font-family:arial,helvetica,sans-serif">GTTCCGAGAGCTGAATGAGGCCTTGGAACTCAAGGATGCCCAGGCTGG</span><span style="font-family:arial,helvetica,sans-serif; line-height:1.6">GAAGGAGCCAGGGGGGAGCAGGGCTCACTCCAGCCAC</span></span><span style="font-family:arial,helvetica,sans-serif; font-size:14px; line-height:1.6">CTGAAGTCCAAAAAGGGTCAGTCTAC</span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">GTTCCGAGAGCTGAATGAGGCCTTGGAACTCAAGGATGCCCAGGCTGGGAAGGAGCCAGGGGGGAGCAGGGCTCACTCCAGCCAC</span><span style="font-family:arial,helvetica,sans-serif">CTGAAGTCCAAAAAGGGTCAGTCTAC</span></span></p>
  
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<p><span style="font-family:arial,helvetica,sans-serif; font-size:14px; line-height:1.6">CTCCCGCCATAAAAAACTCATGTTCAAGACAGAAGGGCCTGACTCAGACTGA</span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">CTCCCGCCATAAAAAACTCATGTTCAAGACAGAAGGGCCTGACTCAGACTGA</span></span></p>
  
 
<p>&nbsp;</p>
 
<p>&nbsp;</p>
  
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<p><span style="font-size:14px"><span style="font-family:arial,helvetica,sans-serif">[Amino acid sequence]</span></span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">[Amino acid sequence]</span></span></p>
  
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<p><span style="font-size:14px"><span style="font-family:arial,helvetica,sans-serif">MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPRVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTA</span></span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPRVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTA</span></span></p>
  
−
<p><span style="font-size:14px"><span style="font-family:arial,helvetica,sans-serif">KSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYM</span></span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">KSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYM</span></span></p>
  
−
<p><span style="font-size:14px"><span style="font-family:arial,helvetica,sans-serif">CNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVHVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALSNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAG</span></span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">CNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVHVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALSNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAG</span></span></p>
  
−
<p><span style="font-size:14px"><span style="font-family:arial,helvetica,sans-serif">KEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</span></span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">KEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD</span></span></p>
  
 
<p>&nbsp;</p>
 
<p>&nbsp;</p>
  
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<p><span style="font-size:14px"><span style="font-family:arial,helvetica,sans-serif">[Second structure]</span></span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">[Second structure]</span></span></p>
  
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<p>&nbsp;</p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">http://www.compbio.dundee.ac.uk/jpred4/results/jp_K4PuIVK/jp_K4PuIVK.results.html</span></span></p>
 +
 
 +
<p>Simple result : (<span style="color:#FF0000">H</span>=alpha helix <span style="color:#DAA520">E</span>=beta sheet)<code> </code></p>
 +
 
 +
<p><code>---------------<span style="color:#FF0000">HHHHHHHHH</span>------------------------------------------------------------------------------------<span style="color:#DAA520">EEEEE</span>----------<span style="color:#DAA520">EEE</span>-----<span style="color:#DAA520">EEEE</span>----<span style="color:#DAA520">EEEEEEEE</span>--------<span style="color:#DAA520">EEEEEEEE</span>---------<span style="color:#FF0000">HHH</span>-----------------<span style="color:#DAA520">EEEEE</span>-----<span style="color:#DAA520">EEEEE</span>-----<span style="color:#DAA520">EEEEEEE</span>---------<span style="color:#DAA520">EEEEEEEEEE</span>------------<span style="color:#DAA520">EEEEEEEE</span>----<span style="color:#DAA520">EEEEEEEEEEEE</span>---------<span style="color:#FF0000">HHHHHH</span>-------------------------------------<span style="color:#DAA520">EEEEEEE</span>---<span style="color:#FF0000">HHHHHHHHHHHHHHHHHHHHH</span>------------------------------------</code></p>
  
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<p><span style="font-size:14px"><span style="font-family:arial,helvetica,sans-serif">__________________________________________________________________________________________________________________________________________</span></span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">__________________________________________________________________________________________________________________________________________</span></span></p>
  
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<p><span style="font-size:14px"><span style="font-family:arial,helvetica,sans-serif">[[H.W.1]]</span></span></p>
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<p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">[[H.W.1]]</span></span></p>

Latest revision as of 11:58, 26 May 2016

>Perl Code of P53

 

[DNA sequence]

ATGGAGGAGCCGCAGTCAGATCCTAGCGTCGAGCCCCCTCTGAGTCAGGAAACATTTTCAGACCTATGGAAACTACTTCCTGAAAACAACGTTCTGTCCCCCTTGCCGTCCCAA

GCAATGGATGATTTGATGCTGTCCCCGGACGATATTGAACAATGGTTCACTGAAGACCCAGGTCCAGATGAAGCTCCCAGAATGCCAGAGGCTGCTCCCCGCGTGGCCCCTGC

ACCAGCAGCTCCTACACCGGCGGCCCCTGCACCAGCCCCCTCCTGGCCCCTGTCATCTTCTGTCCCTTCCCAGAAAACCTACCAGGGCAGCTACGGTTTCCGTCTGGGCTTCT

TGCATTCTGGGACAGCCAAGTCTGTGACTTGCACGTACTCCCCTGCCCTCAACAAGATGTTTTGCCAACTGGCCAAGACCTGCCCTGTGCAGCTGTGGGTTGATTCCACACCC

CCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGATGGTCTGG

CCCCTCCTCAGCATCTTATCCGAGTGGAAGGAAATTTGCGTGTGGAGTATTTGGATGACAGAAACACTTTTCGACATAGTGTGGTGGTGCCCTATGAGCCGCCTGAGGTTGGCT

CTGACTGTACCACCATCCACTACAACTACATGTGTAACAGTTCCTGCATGGGCGGCATGAACCGGAGGCCCATCCTCACCATCATCACACTGGAAGACTCCAGTGGTAATCTACT

GGGACGGAACAGCTTTGAGGTGCATGTTTGTGCCTGTCCTGGGAGAGACCGGCGCACAGAGGAAGAGAATCTCCGCAAGAAAGGGGAGCCTCACCACGAGCTGCCCCCAGG

GAGCACTAAGCGAGCACTGTCCAACAACACCAGCTCCTCTCCCCAGCCAAAGAAGAAACCACTGGATGGAGAATATTTCACCCTTCAGATCCGTGGGCGTGAGCGCTTCGAGAT

GTTCCGAGAGCTGAATGAGGCCTTGGAACTCAAGGATGCCCAGGCTGGGAAGGAGCCAGGGGGGAGCAGGGCTCACTCCAGCCACCTGAAGTCCAAAAAGGGTCAGTCTAC

CTCCCGCCATAAAAAACTCATGTTCAAGACAGAAGGGCCTGACTCAGACTGA

 

[Amino acid sequence]

MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPRVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTA

KSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYM

CNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVHVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALSNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAG

KEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD

 

[Second structure]

http://www.compbio.dundee.ac.uk/jpred4/results/jp_K4PuIVK/jp_K4PuIVK.results.html

Simple result : (H=alpha helix E=beta sheet)

---------------HHHHHHHHH------------------------------------------------------------------------------------EEEEE----------EEE-----EEEE----EEEEEEEE--------EEEEEEEE---------HHH-----------------EEEEE-----EEEEE-----EEEEEEE---------EEEEEEEEEE------------EEEEEEEE----EEEEEEEEEEEE---------HHHHHH-------------------------------------EEEEEEE---HHHHHHHHHHHHHHHHHHHHH------------------------------------

__________________________________________________________________________________________________________________________________________

H.W.1

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