Difference between revisions of "Homo sapiens catenin beta 1 (CTNNB1)"
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| − | <p>[[Perl Code]]</p> | + | <p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">>[[Perl Code of CTNNB1]]</span></span></p> |
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| + | <p> </p> | ||
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| + | <p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">[DNA sequence]</span></span></p> | ||
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| + | <p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">ATGGCTACTCAA</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">GCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAAC</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">AGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCT</span></span></p> | ||
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| + | <p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">CTGAGTGGTAAAGGCAA</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">TCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTC</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">ACTCAAGAACAAGTAGCTGATATTGATGGACAGTATGCAATGACTCGAG</span></span></p> | ||
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| + | <p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">CTCAGAGGGTACGAGCTGCTA</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">TGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAA</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">TGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGT</span></span></p> | ||
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| + | <p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">TGTAAACTTGATTAACTATCAAGAT</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">GATGCAGAACTTGCCACACGTGCAATCCCTGAACTGACAAAACTGCTAAATGACGAGGACCAGGTGGTGG</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">TTAATAAGGCTGCAGTTATGGTCCATCAGCTTTCTAAAAAGG</span></span></p> | ||
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| + | <p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">AAGCTTCCAGACACGCTATCATGCGTTC</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">TCCTCAGATGGTGTCTGCTATTGTACGTACCATGCAGAATACAAATGATGTAGAAACAGCTCGTTGTACC</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">GCTGGGACCTTGCATAACCTTTCCCATCATCGTGAGGGC</span></span></p> | ||
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| + | <p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">TTACTGGCCATCTTTAAGTCTGGAGGCATTC</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">CTGCCCTGGTGAAAATGCTTGGTTCACCAGTGGATTCTGTGTTGTTTTATGCCATTACAACTCTCCACAA</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">CCTTTTATTACATCAAGAAGGAGCTAAAATGGCAGTG</span></span></p> | ||
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| + | <p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">CGTTTAGCTGGTGGGCTGCAGAAAATGGTTGCC</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">TTGCTCAACAAAACAAATGTTAAATTCTTGGCTATTACGACAGACTGCCTTCAAATTTTAGCTTATGGCA</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">ACCAAGAAAGCAAGCTCATCATACTGGCTAGTGGT</span></span></p> | ||
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| + | <p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">GGACCCCAAGCTTTAGTAAATATAATGAGGACCTA</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">TACTTACGAAAAACTACTGTGGACCACAAGCAGAGTGCTGAAGGTGCTATCTGTCTGCTCTAGTAATAAG</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">CCGGCTATTGTAGAAGCTGGTGGAATGCAAGC</span></span></p> | ||
| + | |||
| + | <p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">TTTAGGACTTCACCTGACAGATCCAAGTCAACGTCTTG</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">TTCAGAACTGTCTTTGGACTCTCAGGAATCTTTCAGATGCTGCAACTAAACAGGAAGGGATGGAAGGTCT</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">CCTTGGGACTCTTGTTCAGCTTCTGGGT</span></span></p> | ||
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| + | <p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">TCAGATGATATAAATGTGGTCACCTGTGCAGCTGGAATTCTT</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">TCTAACCTCACTTGCAATAATTATAAGAACAAGATGATGGTCTGCCAAGTGGGTGGTATAGAGGCTCTTG</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">TGCGTACTGTCCTTCGGGCTGGTGAC</span></span></p> | ||
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| + | <p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">AGGGAAGACATCACTGAGCCTGCCATCTGTGCTCTTCGTCATCT</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">GACCAGCCGACACCAAGAAGCAGAGATGGCCCAGAATGCAGTTCGCCTTCACTATGGACTACCAGTTGTG</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">GTTAAGCTCTTACACCCACC</span></span></p> | ||
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| + | <p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">ATCCCACTGGCCTCTGATAAAGGCTACTGTTGGATTGATTCGAAATCTTG</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">CCCTTTGTCCCGCAAATCATGCACCTTTGCGTGAGCAGGGTGCCATTCCACGACTAGTTCAGTTGCTTGT</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">TCGTGCACATCAGGAT</span></span></p> | ||
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| + | <p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">ACCCAGCGCCGTACGTCCATGGGTGGGACACAGCAGCAATTTGTGGAGGGGGTC</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">CGCATGGAAGAAATAGTTGAAGGTTGTACCGGAGCCCTTCACATCCTAGCTCGGGATGTTCACAACCGAA</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">TTGTTATCAG</span></span></p> | ||
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| + | <p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">AGGACTAAATACCATTCCATTGTTTGTGCAGCTGCTTTATTCTCCCATTGAAAACATCCA</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">AAGAGTAGCTGCAGGGGTCCTCTGTGAACTTGCTCAGGACAAGGAAGCTGCAGAAGCTATTGAAGCTGAG</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">GGAGCC</span></span></p> | ||
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| + | <p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">ACAGCTCCTCTGACAGAGTTACTTCACTCTAGGAATGAAGGTGTGGCGACATATGCAGCTGCTG</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">TTTTGTTCCGAATGTCTGAGGACAAGCCACAAGATTACAAGAAACGGCTTTCAGTTGAGCTGACCAGCTC</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">T</span></span></p> | ||
| + | |||
| + | <p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">CTCTTCAGAACAGAGCCAATGGCTTGGAATGAGACTGCTGATCTTGGACTTGATATTGGTGCCCAGGGA</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">GAACCCCTTGGATATCGCCAGGATGATCCTAGCTATCGTTCTTTTCACTCTGGTGGATATGGCCAGG</span></span></p> | ||
| + | |||
| + | <p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">ATG</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">CCTTGGGTATGGACCCCATGATGGAACATGAGATGGGTGGCCACCACCCTGGTGCTGACTATCCAGTTGA</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">TGGGCTGCCAGATCTGGGGCATGCCCAGGACCTCATGGATGGGCTGCCTCCAGGTGACAG</span></span></p> | ||
| + | |||
| + | <p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">CAATCAGCTG</span></span><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">GCCTGGTTTGATACTGACCTGTAA</span></span></p> | ||
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| + | <p> </p> | ||
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| + | <p><span style="font-size:12px"><span style="font-family:arial,helvetica,sans-serif">[Amino acid sequence]</span></span></p> | ||
| + | |||
| + | <p>MATQADLMELDMAMEPDRKAAVSHWQQQSYLDSGIHSGATTTAPSLSGKGNPEEEDVDTSQVLYEWEQGFSQSFTQEQVADIDGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDAAHPTNVQRLAEPSQMLKH</p> | ||
| + | |||
| + | <p>AVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV</p> | ||
| + | |||
| + | <p>RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDI</p> | ||
| + | |||
| + | <p>NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM</p> | ||
| + | |||
| + | <p>GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADL</p> | ||
| + | |||
| + | <p>GLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDALGMDPMMEHEMG GHHPGADYPVDGLPDLGHAQDLMDGLPPGDSNQLAWFDTDL</p> | ||
| + | |||
| + | <p> </p> | ||
| + | |||
| + | <p>[Second structure]</p> | ||
| + | |||
| + | <p>http://www.compbio.dundee.ac.uk/jpred4/results/jp_RZOdinb/jp_RZOdinb.results.html</p> | ||
| + | |||
| + | <p>Simple result : (<span style="color:#FF0000">H</span>=alpha helix <span style="color:#DAA520">E</span>=beta sheet)</p> | ||
| + | |||
| + | <p><code>----------------<span style="color:#FF0000">HHHHHHHHHH</span>-----------------------------------<span style="color:#FF0000">HHH</span>---------------<span style="color:#FF0000">HHHHHHHHHHH</span>-------<span style="color:#FF0000">HH-HHHHHH</span>-------------<span style="color:#FF0000">HHHHHHH-HHHHHHHHHHHHHH</span>----<span style="color:#FF0000">HHHHHHHHHHHHHHH</span>----<span style="color:#FF0000">HHHHHHHHHHHHHHH</span>-----<span style="color:#FF0000">HHHHHH</span>---<span style="color:#FF0000">HHHHHHHHH</span>------<span style="color:#FF0000">HHHHHHHHHHHHHH</span>-----<span style="color:#FF0000">HHHHH</span>-----<span style="color:#FF0000">HHHHHH</span>-----<span style="color:#FF0000">HHHHHHHHHHHHHH</span>--------<span style="color:#FF0000">HHHHHH</span>---<span style="color:#FF0000">HHHHHH</span>-------<span style="color:#DAA520">EE</span><span style="color:#FF0000">HHHHHHHHH</span>---------<span style="color:#DAA520">EEEE</span>-----<span style="color:#FF0000">HHHHHHHH</span>----<span style="color:#FF0000">HHHHHHHHHHH</span>------------------<span style="color:#FF0000">HHHHHHHH</span>---<span style="color:#FF0000">HHHHHHHHHHHHHH</span>--------<span style="color:#FF0000">HHHHHHHHHHHH</span>--------<span style="color:#FF0000">HHHHHHHHH</span>------------<span style="color:#DAA520">E</span>------<span style="color:#FF0000">HHHHHHHHH</span>--------------------------------------<span style="color:#FF0000">HHHHH</span>--------<span style="color:#FF0000">HHHHHHHHHHHHHHHH</span>--------------<span style="color:#FF0000">HHHHHHHHHH</span>-<span style="color:#FF0000">HHHHHH</span>--------------<span style="color:#FF0000">HHHHHHHHHHHHHHH</span>-------<span style="color:#FF0000">HHHHH</span>----<span style="color:#FF0000">HHHHHHHH</span>----<span style="color:#FF0000">HHHHHHHHHHHHHHH</span>---<span style="color:#FF0000">HHHHHHHH</span>----<span style="color:#FF0000">HHHHHHH</span>-----<span style="color:#FF0000">HHHHHHHHHHHHH</span>-----<span style="color:#FF0000">HHHHHHHHHH</span>---<span style="color:#FF0000">HH</span>--------<span style="color:#FF0000">HHHHHH</span>-------------------------------------------------------------------------------------</code></p> | ||
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| + | <p>________________________________________________________________________________________________________________________________________________________________________________________________________</p> | ||
| + | |||
| + | <p>[[H.W.1]]</p> | ||
Latest revision as of 11:52, 26 May 2016
[DNA sequence]
ATGGCTACTCAAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCT
CTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGATATTGATGGACAGTATGCAATGACTCGAG
CTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGT
TGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGTGCAATCCCTGAACTGACAAAACTGCTAAATGACGAGGACCAGGTGGTGGTTAATAAGGCTGCAGTTATGGTCCATCAGCTTTCTAAAAAGG
AAGCTTCCAGACACGCTATCATGCGTTCTCCTCAGATGGTGTCTGCTATTGTACGTACCATGCAGAATACAAATGATGTAGAAACAGCTCGTTGTACCGCTGGGACCTTGCATAACCTTTCCCATCATCGTGAGGGC
TTACTGGCCATCTTTAAGTCTGGAGGCATTCCTGCCCTGGTGAAAATGCTTGGTTCACCAGTGGATTCTGTGTTGTTTTATGCCATTACAACTCTCCACAACCTTTTATTACATCAAGAAGGAGCTAAAATGGCAGTG
CGTTTAGCTGGTGGGCTGCAGAAAATGGTTGCCTTGCTCAACAAAACAAATGTTAAATTCTTGGCTATTACGACAGACTGCCTTCAAATTTTAGCTTATGGCAACCAAGAAAGCAAGCTCATCATACTGGCTAGTGGT
GGACCCCAAGCTTTAGTAAATATAATGAGGACCTATACTTACGAAAAACTACTGTGGACCACAAGCAGAGTGCTGAAGGTGCTATCTGTCTGCTCTAGTAATAAGCCGGCTATTGTAGAAGCTGGTGGAATGCAAGC
TTTAGGACTTCACCTGACAGATCCAAGTCAACGTCTTGTTCAGAACTGTCTTTGGACTCTCAGGAATCTTTCAGATGCTGCAACTAAACAGGAAGGGATGGAAGGTCTCCTTGGGACTCTTGTTCAGCTTCTGGGT
TCAGATGATATAAATGTGGTCACCTGTGCAGCTGGAATTCTTTCTAACCTCACTTGCAATAATTATAAGAACAAGATGATGGTCTGCCAAGTGGGTGGTATAGAGGCTCTTGTGCGTACTGTCCTTCGGGCTGGTGAC
AGGGAAGACATCACTGAGCCTGCCATCTGTGCTCTTCGTCATCTGACCAGCCGACACCAAGAAGCAGAGATGGCCCAGAATGCAGTTCGCCTTCACTATGGACTACCAGTTGTGGTTAAGCTCTTACACCCACC
ATCCCACTGGCCTCTGATAAAGGCTACTGTTGGATTGATTCGAAATCTTGCCCTTTGTCCCGCAAATCATGCACCTTTGCGTGAGCAGGGTGCCATTCCACGACTAGTTCAGTTGCTTGTTCGTGCACATCAGGAT
ACCCAGCGCCGTACGTCCATGGGTGGGACACAGCAGCAATTTGTGGAGGGGGTCCGCATGGAAGAAATAGTTGAAGGTTGTACCGGAGCCCTTCACATCCTAGCTCGGGATGTTCACAACCGAATTGTTATCAG
AGGACTAAATACCATTCCATTGTTTGTGCAGCTGCTTTATTCTCCCATTGAAAACATCCAAAGAGTAGCTGCAGGGGTCCTCTGTGAACTTGCTCAGGACAAGGAAGCTGCAGAAGCTATTGAAGCTGAGGGAGCC
ACAGCTCCTCTGACAGAGTTACTTCACTCTAGGAATGAAGGTGTGGCGACATATGCAGCTGCTGTTTTGTTCCGAATGTCTGAGGACAAGCCACAAGATTACAAGAAACGGCTTTCAGTTGAGCTGACCAGCTCT
CTCTTCAGAACAGAGCCAATGGCTTGGAATGAGACTGCTGATCTTGGACTTGATATTGGTGCCCAGGGAGAACCCCTTGGATATCGCCAGGATGATCCTAGCTATCGTTCTTTTCACTCTGGTGGATATGGCCAGG
ATGCCTTGGGTATGGACCCCATGATGGAACATGAGATGGGTGGCCACCACCCTGGTGCTGACTATCCAGTTGATGGGCTGCCAGATCTGGGGCATGCCCAGGACCTCATGGATGGGCTGCCTCCAGGTGACAG
CAATCAGCTGGCCTGGTTTGATACTGACCTGTAA
[Amino acid sequence]
MATQADLMELDMAMEPDRKAAVSHWQQQSYLDSGIHSGATTTAPSLSGKGNPEEEDVDTSQVLYEWEQGFSQSFTQEQVADIDGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDAAHPTNVQRLAEPSQMLKH
AVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV
RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDI
NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM
GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADL
GLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDALGMDPMMEHEMG GHHPGADYPVDGLPDLGHAQDLMDGLPPGDSNQLAWFDTDL
[Second structure]
http://www.compbio.dundee.ac.uk/jpred4/results/jp_RZOdinb/jp_RZOdinb.results.html
Simple result : (H=alpha helix E=beta sheet)
----------------HHHHHHHHHH-----------------------------------HHH---------------HHHHHHHHHHH-------HH-HHHHHH-------------HHHHHHH-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-----HHHHHH---HHHHHHHHH------HHHHHHHHHHHHHH-----HHHHH-----HHHHHH-----HHHHHHHHHHHHHH--------HHHHHH---HHHHHH-------EEHHHHHHHHH---------EEEE-----HHHHHHHH----HHHHHHHHHHH------------------HHHHHHHH---HHHHHHHHHHHHHH--------HHHHHHHHHHHH--------HHHHHHHHH------------E------HHHHHHHHH--------------------------------------HHHHH--------HHHHHHHHHHHHHHHH--------------HHHHHHHHHH-HHHHHH--------------HHHHHHHHHHHHHHH-------HHHHH----HHHHHHHH----HHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHH-----HHHHHHHHHHHHH-----HHHHHHHHHH---HH--------HHHHHH-------------------------------------------------------------------------------------
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