Difference between revisions of "Su-jin Ha"

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<p><strong><font size="3">Sujin's Bioinformatics </font><br />
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<p><strong>&nbsp;Bioinformatics</strong> involves the use of techniques including applied mathematics, informatics, statistics, computer science, chemistry, and biochemistry to solve biological problems. Major research efforts in the field include sequence alignment, gene finding, genome assembly, protein structure alignment, protein structure prediction, prediction of gene expression and protein-protein interactions, and the modeling of evolution.</p>
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<p>&nbsp;</p>
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<h2><span class="mw-headline">Bioprogramming</span></h2>
US</strong></p>
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<p><strong>Bioprogramming</strong> is all the <span style="color: #008080">programming</span> activities for analyzing biological data.</p>
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<p>&nbsp;</p>
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<h3><span class="mw-headline">Programming is?</span></h3>
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<p><strong>&nbsp;Programming</strong> is a process that leads from an original formulation of a computing problem to executable computer programs. Programming involves activities such as analysis, developing understanding, generating algorithms, verification of requirements of algorithms including their correctness and resources consumption, and coding of algorithms in a target programming language. <span style="color: #008080">The purpose of programming</span> is to find a sequence of instructions that will automate performing a specific task or solving a given problem.</p>
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<p>&nbsp;</p>
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<h3><span class="mw-headline">Making compliers</span></h3>
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<h3><span class="mw-headline">Types of languages</span></h3>
 
<ul>
 
<ul>
     <li><a href="http://biopedia.org/index.php/Bioinformatics">Bioinformatics </a></li>
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     <li><a title="http://en.wikipedia.org/wiki/R_(programming_language)" class="external text" rel="nofollow" href="http://en.wikipedia.org/wiki/R_(programming_language)"><font color="#008080">R</font></a></li>
    <li><a href="http://www.bu.edu/bioinformatics">Boston University </a>&nbsp;&nbsp;&nbsp;(Bioinformatics graduate program)</li>
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     <li><a title="http://en.wikipedia.org/wiki/S_(programming_language)" class="external text" rel="nofollow" href="http://en.wikipedia.org/wiki/S_(programming_language)"><font color="#008080">S</font></a></li>
    <li><a href="http://motif.stanford.edu/courses.html">Brutlag Bioinformatics Group, Stanford University </a>&nbsp;&nbsp;&nbsp;(Courses at all levels)</li>
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     <li><a title="http://en.wikipedia.org/wiki/MATLAB" class="external text" rel="nofollow" href="http://en.wikipedia.org/wiki/MATLAB"><font color="#008080">MATLAB</font></a></li>
    <li><a href="http://www.cmu.edu/bio/">Carnegie Mellon University</a> &nbsp;&nbsp;&nbsp;(Programs at all levels)</li>
 
    <li><a href="http://www.life.uiuc.edu/biophysics/CBCBWebPages/Program.html">Center for Biophysics and Computational Biology </a>(Undergraduate and Graduate Programs)</li>
 
    <li><a href="http://www.biology.gatech.edu/bioinformatics/Welcome.html">Georgia Institute of Technology </a>&nbsp;&nbsp;&nbsp;(Masters of Science in Bioinformatics)</li>
 
    <li><a href="http://www.courses.fas.harvard.edu/~bphys101/">Harvard Medical School </a>&nbsp;&nbsp;&nbsp;(Course in genomics and computational biology)</li>
 
    <li><a href="http://www.med.nyu.edu/rcr/">New York University School of Medicine </a>&nbsp;&nbsp;&nbsp; (Using Computers in Molecular Biology - Online lecture notes)</li>
 
     <li><a href="http://www.sdsc.edu/pb/edu/pharm207/pharm207.html">San Diego Supercomputer Center </a>&nbsp;&nbsp;&nbsp;(Using Internet Resources in Molecular Biology - Graduate course)</li>
 
    <li><a href="http://cmgm.stanford.edu/biochem218">Stanford University</a><a title="auto second hand" rel="dofollow" href="http://www.all-auto.ro/auto-second-hand"><img border="0" hspace="2" alt="auto second hand" vspace="2" src="http://www.all-auto.ro/images/auto second hand" /></a> &nbsp;&nbsp;&nbsp;(Computational molecular biology course, internet-only)</li>
 
     <li><a href="http://www.bioinformatics.ucla.edu/program/program.htm">UCLA </a>&nbsp;&nbsp;&nbsp;(Courses at all levels)</li>
 
    <li><a href="http://www.sdsc.edu/~gribskov/bimm140/">UC San Diego </a>&nbsp;&nbsp;&nbsp;(Introductory courses)</li>
 
    <li><a href="http://www.cse.ucsc.edu/research/compbio/">UC Santa Cruz </a>&nbsp;&nbsp;&nbsp;(BS in bioinformatics)</li>
 
    <li><a href="http://bioinfo.mbb.yale.edu/">Yale Bioinformatics - Gerstein Group </a>&nbsp;&nbsp;&nbsp;(Courses and lectures)</li>
 
 
</ul>
 
</ul>
<p><strong>Canada</strong></p>
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<h3><span class="mw-headline">Computer</span></h3>
 
<ul>
 
<ul>
     <li><a href="http://bioinformatics.bcgsc.ca/">Training Program in Bioinformatics for Health Research </a>&nbsp;&nbsp;&nbsp;(M.Sc. and Ph.D.)</li>
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     <li><a title="http://en.wikipedia.org/wiki/Computer_programming" class="external text" rel="nofollow" href="http://en.wikipedia.org/wiki/Computer_programming"><font color="#008080">Computer programming</font></a></li>
    <li><a href="http://p-b.med.utoronto.ca/">University of Toronto </a>&nbsp;&nbsp;&nbsp;(Program in Proteomics and BioInformatics)</li>
 
</ul>
 
<p><strong>Europe</strong></p>
 
<ul>
 
    <li><a href="http://mscb.cryst.bbk.ac.uk/">Birkbeck College, University of London </a>&nbsp;&nbsp;&nbsp;(MSc Bioinformatics)</li>
 
    <li><a href="http://www.bioinf.man.ac.uk/education/">Manchester University</a> &nbsp;&nbsp;&nbsp;(MSc in bioinformatics)</li>
 
    <li><a href="http://www.slu.se/page.cfm?page=385&amp;anmkod=10188.0506&amp;soksprak=E">SLU - Swedish University of Agricultural Sciences </a>&nbsp;&nbsp;&nbsp;(Bioinformatics)</li>
 
    <li><a href="http://www.isb-sib.ch/teaching/intro.htm">Swiss Institute of Bioinformatics</a> &nbsp;&nbsp;&nbsp;(Masters program)</li>
 
    <li><a href="http://www.cbs.dtu.dk/dtucourse/index.html">Technical University of Denmark</a> &nbsp;&nbsp;&nbsp;(Elementary and advanced courses)</li>
 
    <li><a href="http://www.ii.uib.no/forskningsgrupper/bio/index-eng.shtml">University of Bergen, Norway</a> &nbsp;&nbsp;&nbsp;(Masters-level courses)</li>
 
    <li><a href="http://www.cebitec.uni-bielefeld.de/GradSchool/">University of Bielefeld, Germany </a>&nbsp;&nbsp;&nbsp;(Graduate program)</li>
 
    <li><a href="http://www.ibg.uu.se/eng_courses/">Uppsala University, Sweden </a>(Basic courses)</li>
 
</ul>
 
<p><strong>Israel</strong></p>
 
<ul>
 
    <li><a href="http://bioinformatics.weizmann.ac.il/courses/">Weizmann Institute </a>&nbsp;&nbsp;&nbsp;(Online course materials)</li>
 
</ul>
 
<p><strong>Australia</strong></p>
 
<ul>
 
    <li><a href="http://bioserve.biochem.latrobe.edu.au/bioinf/course.html">La Trobe University</a> &nbsp;&nbsp;&nbsp;(Basic course)</li>
 
    <li><a href="http://www.cs.mu.oz.au/courses/ugrad/bcsbioinf.html">University of Melbourne</a> &nbsp;&nbsp;&nbsp;(Bioinformatics stream in Computer Science)</li>
 
    <li><a href="http://biochem.otago.ac.nz/chrisb/Bioinfo.htm">University of Otago - Dunedin, New Zealand </a>&nbsp;&nbsp;&nbsp;(Basic courses)</li>
 
    <li><a href="http://florey.biosci.uq.edu.au/Subjects/BC327/index.html">University of Queensland</a> &nbsp;&nbsp;&nbsp;(3rd-year course)</li>
 
    <li><a href="http://www.scifac.usyd.edu.au/future/ug/bsc-bio.html">University of Sydney</a> &nbsp;&nbsp;&nbsp;(BSc program)</li>
 
</ul>
 
<p><strong>Asia &amp; South Pacific</strong></p>
 
<ul>
 
    <li><a href="http://www.bii.a-star.edu.sg/education/index.asp">BioInformatics Institute, Singapore </a>&nbsp;&nbsp;&nbsp;(Ph.D program)</li>
 
    <li><a href="http://www.genebee.msu.su/courses/news-eng.html">Moscow State University, Russia </a>&nbsp;&nbsp;&nbsp;(GCG courses)</li>
 
    <li><a href="http://www.life.nthu.edu.tw/jkhwang/class/bioinfo/main.html">National Tsing Hua University, Taiwan</a> &nbsp;&nbsp;&nbsp;(Undergraduate course)</li>
 
    <li><a href="http://www.bic.nus.edu.sg/">National University of Singapore </a>&nbsp;&nbsp;&nbsp;(Training and workshops)</li>
 
 
</ul>
 
</ul>
 
<p>&nbsp;</p>
 
<p>&nbsp;</p>
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<h3><span class="mw-headline">Grammer</span></h3>
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<p>The whole system and structure of a language or of languages in general, usually taken as consisting of syntax and morphology (including inflections) and sometimes also phonology and semantics.</p>
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<p>&nbsp;</p>
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<h2><span class="mw-headline">Genomics</span></h2>

Latest revision as of 10:32, 15 May 2015

 Bioinformatics involves the use of techniques including applied mathematics, informatics, statistics, computer science, chemistry, and biochemistry to solve biological problems. Major research efforts in the field include sequence alignment, gene finding, genome assembly, protein structure alignment, protein structure prediction, prediction of gene expression and protein-protein interactions, and the modeling of evolution.

 

Bioprogramming

Bioprogramming is all the programming activities for analyzing biological data.

 

Programming is?

 Programming is a process that leads from an original formulation of a computing problem to executable computer programs. Programming involves activities such as analysis, developing understanding, generating algorithms, verification of requirements of algorithms including their correctness and resources consumption, and coding of algorithms in a target programming language. The purpose of programming is to find a sequence of instructions that will automate performing a specific task or solving a given problem.

 

Making compliers

Types of languages

Computer

 

Grammer

The whole system and structure of a language or of languages in general, usually taken as consisting of syntax and morphology (including inflections) and sometimes also phonology and semantics.

 

Genomics