Difference between revisions of "Bacterial genomics"

From Biolecture.org
imported>S
(Created page with "<p><span class="mw-cite-backlink"><span><b><span style="font-size: large">List of sequenced bacterial genomes</span></b></span></span></p> <p> </p> <p><span style="font...")
(Created page with "<p><span class="mw-cite-backlink"><span><b><span style="font-size: large">List of sequenced bacterial genomes</span></b></span></span></p> <p> </p> <p><span style="font...")
 
(No difference)

Latest revision as of 13:49, 19 July 2012

List of sequenced bacterial genomes

 

External links

http://en.wikipedia.org/wiki/List_of_sequenced_bacterial_genomes

 

Project pages and papers

  1.  "Entrez Genome Database Search". National Center for Biotechnology Information. http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome. Search for details on specific genomes by organism name and strain.
  2. ^ Deckert G et al. (1998). "The complete genome of the hyperthermophilic bacterium Aquifex aeolicus". Nature 392 (6674): 353–8. DOI:10.1038/32831. PMID 9537320.
  3. ^ Cerdeño-Tárraga AM et al. (2005). "Extensive DNA inversions in the B. fragilis genome control variable gene expression". Science 307 (5714): 1463–5. DOI:10.1126/science.1107008. PMID 15746427. http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=15746427.
  4. ^ Kuwahara T, Yamashita A, Hirakawa H, et al. (2004). "Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation". PNAS 101 (41): 14919–14924.
  5. ^ Xu J et al. (2003). "A genomic view of the human-Bacteroides thetaiotaomicron symbiosis". Science 299 (5615): 2074–6. DOI:10.1126/science.1080029. PMID 12663928. http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=12663928.
  6. ^ Schmitz-Esser,S., Tischler,P., Arnold,R., et al. (2010). "The genome of the amoeba symbiont 'Candidatus Amoebophilus asiaticus' reveals common mechanisms for host cell interaction among amoeba-associated bacteria". J. Bacteriol. 192 (4): 1045–1057. DOI:10.1128/JB.01379-09. PMC 2812958. PMID 20023027. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2812958.
  7. ^ Eisen JA et al. (2002). "The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium". Proc Natl Acad Sci U S 99 (14): 9509–14. DOI:10.1073/pnas.132181499. PMC 123171. PMID 12093901. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12093901.
  8. ^ Xie G, Bruce DC, Challacombe JF, et al. (June, 2007). "Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii". Appl Environ Microbiol. 73 (11): 3536–3546. DOI:10.1128/AEM.00225-07. PMC 1932680. PMID 17400776. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1932680.
  9. ^ Daligault,H., Lapidus,A., Zeytun,A., et al. (2011). "Complete genome sequence of Haliscomenobacter hydrossis type strain (O)". Stand Genomic Sci 4 (3): 352–360. DOI:10.4056/sigs.1964579. PMC 3156403. PMID 21886862. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3156403.
  10. ^ Naito M, Hirakawa H, Yamashita A, et al. (2008). "Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis". DNA Res. 15 (4): 215–225. DOI:10.1093/dnares/dsn013. PMC 2575886. PMID 18524787. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2575886.
  11. ^ Nelson KE et al. (2003). "Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83". J Bacteriol 185 (18): 5591–601. DOI:10.1128/JB.185.18.5591-5601.2003. PMC 193775. PMID 12949112. http://jb.asm.org/cgi/pmidlookup?view=long&pmid=12949112.
  12. ^ Mongodin EF et al. (2005). "The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea". Proc Natl Acad Sci USA 102 (50): 18147–52. DOI:10.1073/pnas.0509073102. PMC 1312414. PMID 16330755. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=16330755.
  13. ^ Pena A, Teeling H, Huerta-Cepas J, et al. (2010). "Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains". ISME J 4 (7): 882–895.
  14. ^ a b Read TD et al. (2000). "Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39". Nucleic Acids Res 28 (6): 1397–406. DOI:10.1093/nar/28.6.1397. PMC 111046. PMID 10684935. http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=10684935.
  15. ^ Carlson JH et al. (2005). "Comparative genomic analysis of Chlamydia trachomatis oculotropic and genitotropic strains". Infect Immun 73 (10): 6407–18. DOI:10.1128/IAI.73.10.6407-6418.2005. PMC 1230933. PMID 16177312. http://iai.asm.org/cgi/pmidlookup?view=long&pmid=16177312.
  16. ^ Stephens RS et al. (1998). "Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis". Science 282 (5389): 754–9. DOI:10.1126/science.282.5389.754. PMID 9784136. http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=9784136.
  17. ^ Thomson NR et al. (2005). "The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation". Genome Res 15 (5): 629–40. DOI:10.1101/gr.3684805. PMC 1088291. PMID 15837807. http://www.genome.org/cgi/pmidlookup?view=long&pmid=15837807.
  18. ^ Read TD et al. (2003). "Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae". Nucleic Acids Res 31 (8): 2134–47. DOI:10.1093/nar/gkg321. PMC 153749. PMID 12682364. http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=12682364.
  19. ^ Kalman S et al. (1999). "Comparative genomes of Chlamydia pneumoniae and C. trachomatis". Nat Genet 21 (4): 385–9. DOI:10.1038/7716. PMID 10192388.
  20. ^ J Infect Dis. 2000 Jun, 181 Suppl 3:S524-7
  21. ^ Horn M et al. (2004). "Illuminating the evolutionary history of chlamydiae". Science 304 (5671): 728–30. DOI:10.1126/science.1096330. PMID 15073324. http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=15073324.
  22. ^ Seshadri R et al. (2005). "Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes". Science 307 (5706): 105–8. DOI:10.1126/science.1102226. PMID 15637277. http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=15637277.
  23. ^ Kube M et al. (2005). "Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1". Nat Biotechnol 23 (10): 1269–73. DOI:10.1038/nbt1131. PMID 16116419.
  24. ^ DNA Res. 2001 Oct 31;8(5):205-13, 8(5):205-13; 227-53
  25. ^ a b Allewalt JP et al. (2006). "Effect of temperature and light on growth of and photosynthesis by Synechococcus isolates typical of those predominating in the octopus spring microbial mat community of Yellowstone National Park". Appl Environ Microbiol 72 (1): 544–50. DOI:10.1128/AEM.72.1.544-550.2006. PMC 1352173. PMID 16391090. http://aem.asm.org/cgi/pmidlookup?view=long&pmid=16391090.
  26. ^ Nakamura Y et al. (2003). "Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylakoids". DNA Res 10 (4): 137–45. DOI:10.1093/dnares/10.4.137. PMID 14621292. http://dnaresearch.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=14621292.
  27. ^ a b Rocap G et al. (2003). "Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation". Nature 424 (6952): 1042–7. DOI:10.1038/nature01947. PMID 12917642.
  28. ^ Dufresne A et al. (2003). "Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome". Proc Natl Acad Sci USA 100 (17): 10020–5. DOI:10.1073/pnas.1733211100. PMC 187748. PMID 12917486. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12917486.
  29. ^ Palenik B et al. (2003). "The genome of a motile marine Synechococcus". Nature 424 (6952): 1037–42. DOI:10.1038/nature01943. PMID 12917641.
  30. ^ Kaneko, T. et al. (1995). "Sequence Analysis of the Genome of the Unicellular Cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence Features in the 1 Mb Region from Map Positions 64% to 92% of the Genome". DNA Res. 2 (4): 153–66. DOI:10.1093/dnares/2.4.153. PMID 8590279.
  31. ^ de Groot A, Dulermo R, Ortet P, et al. (2009). "Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti". PLoS Genet. 5 (3): e1000434.
  32. ^ Yuan M, Chen M, Zhang W, et al. (2012). "Genome Sequence and Transcriptome Analysis of the Radioresistant Bacterium Deinococcus gobiensis: Insights into the Extreme Environmental Adaptations". PLoS ONE 7 (3): e34458.
  33. ^ White O et al. (1999). "Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1". Science 286 (5444): 1571–7. DOI:10.1126/science.286.5444.1571. PMID 10567266. http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=10567266.
  34. ^ Sikorski J, Tindall BJ, Lowry S, et al. (2010). "Complete genome sequence of Meiothermus silvanus type strain (VI-R2)". Stand Genomic Sci 3 (1): 37–46. DOI:10.4056/sigs.1042812. PMC 3035272. PMID 21304690. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3035272.
  35. ^ Gounder K, Brzuszkiewicz E, Liesegang H, et al. (2011). "Sequence of the hyperplastic genome of the naturally competent Thermus scotoductus SA-01". BMC Genomics 12: 577.
  36. ^ Henne A et al. (2004). "The genome sequence of the extreme thermophile Thermus thermophilus". Nat Biotechnol 22 (5): 547–53. DOI:10.1038/nbt956. PMID 15064768.
  37. ^ Schell MA et al. (2002). "The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract". Proc Natl Acad Sci USA 99 (22): 14422–7. DOI:10.1073/pnas.212527599. PMC 137899. PMID 12381787. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12381787.
  38. ^ Cerde√ɬ±o-T√ɬ°rraga AM et al. (2003). "The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129". Nucleic Acids Res 31 (22): 6516–23. DOI:10.1093/nar/gkg874. PMC 275568. PMID 14602910. http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=14602910.
  39. ^ Nishio Y et al. (2003). "Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens". Genome Res 13 (7): 1572–9. DOI:10.1101/gr.1285603. PMC 403753. PMID 12840036. http://www.genome.org/cgi/pmidlookup?view=long&pmid=12840036.
  40. ^ Kalinowski J et al. (2003). "The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins". J Biotechnol 104 (1–3): 5–25. DOI:10.1016/S0168-1656(03)00154-8. PMID 12948626. http://linkinghub.elsevier.com/retrieve/pii/S0168165603001548.
  41. ^ Tauch A et al. (2005). "Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora". J Bacteriol 187 (13): 4671–82. DOI:10.1128/JB.187.13.4671-4682.2005. PMC 1151758. PMID 15968079. http://jb.asm.org/cgi/pmidlookup?view=long&pmid=15968079.
  42. ^ Li L et al. (2005). "The complete genome sequence of Mycobacterium avium subspecies paratuberculosis". Proc Natl Acad Sci USA 102 (35): 12344–9. DOI:10.1073/pnas.0505662102. PMC 1194940. PMID 16116077. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=16116077.
  43. ^ Garnier T et al. (2003). "The complete genome sequence of Mycobacterium bovis". Proc Natl Acad Sci USA 100 (13): 7877–82. DOI:10.1073/pnas.1130426100. PMC 164681. PMID 12788972. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12788972.
  44. ^ Cole ST et al. (2001). "Massive gene decay in the leprosy bacillus". Nature 409 (6823): 1007–11. DOI:10.1038/35059006. PMID 11234002.
  45. ^ Cole ST et al. (1998). "Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence". Nature 393 (6685): 537–44. DOI:10.1038/31159. PMID 9634230.
  46. ^ Ishikawa J et al. (2004). "The complete genomic sequence of Nocardia farcinica IFM 10152". Proc Natl Acad Sci USA 101 (41): 14925–30. DOI:10.1073/pnas.0406410101. PMC 522048. PMID 15466710. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15466710.
  47. ^ Omura S et al. (2001). "Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites". Proc Natl Acad Sci USA 98 (21): 12215–20. DOI:10.1073/pnas.211433198. PMC 59794. PMID 11572948. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=11572948.
  48. ^ Redenbach M et al. (1996). "A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome". Mol Microbiol 21 (1): 77–96. DOI:10.1046/j.1365-2958.1996.6191336.x. PMID 8843436.
  49. ^ Ueda K et al. (2004). "Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalism". Nucleic Acids Res 32 (16): 4937–44. DOI:10.1093/nar/gkh830. PMC 519118. PMID 15383646. http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=15383646.
  50. ^ Raoult D et al. (2003). "Tropheryma whipplei Twist: a human pathogenic Actinobacteria with a reduced genome". Genome Res 13 (8): 1800–9. DOI:10.1101/gr.1474603 (inactive 2010-03-16). PMC 403771. PMID 12902375. http://www.genome.org/cgi/pmidlookup?view=long&pmid=12902375.
  51. ^ Read TD et al. (2003). "The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria". Nature 423 (6935): 81–6. DOI:10.1038/nature01586. PMID 12721629.
  52. ^ Rasko DA et al. (2004). "The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1". Nucleic Acids Res 32 (3): 977–88. DOI:10.1093/nar/gkh258. PMC 373394. PMID 14960714. http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=14960714.
  53. ^ Ivanova N et al. (2003). "Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis". Nature 423 (6935): 87–91. DOI:10.1038/nature01582. PMID 12721630.
  54. ^ Kobayashi T et al. (1995). "Purification and properties of an alkaline protease from alkalophilic Bacillus sp. KSM-K16". Appl Microbiol Biotechnol 43 (3): 473–81. DOI:10.1007/BF00218452. PMID 7632397. http://link.springer.de/link/service/journals/00253/bibs/5043003/50430473.htm.
  55. ^ Takami H et al. (1999). "An improved physical and genetic map of the genome of alkaliphilic Bacillus sp. C-125". Extremophiles 3 (1): 21–8. DOI:10.1007/s007920050095. PMID 10086841.
  56. ^ Rey MW et al. (2004). "Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species". Genome Biol 5 (10): R77. DOI:10.1186/gb-2004-5-10-r77. PMC 545597. PMID 15461803. http://genomebiology.com/1465-6906/5/R77.
  57. ^ a b Veith B et al. (2004). "The complete genome sequence of Bacillus licheniformis DSM13, an organism with great industrial potential". J Mol Microbiol Biotechnol 7 (4): 204–11. DOI:10.1159/000079829. PMID 15383718. http://content.karger.com/produktedb/produkte.asp?doi=10.1159/000079829&typ=pdf.
  58. ^ Kunst F et al. (1997). "The complete genome sequence of the gram-positive bacterium Bacillus subtilis". Nature 390 (6657): 249–56. DOI:10.1038/36786. PMID 9384377.
  59. ^ Nölling J et al. (2001). "Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum". J Bacteriol 183 (16): 4823–38. DOI:10.1128/JB.183.16.4823-4838.2001. PMC 99537. PMID 11466286. http://jb.asm.org/cgi/pmidlookup?view=long&pmid=11466286.
  60. ^ Shimizu T et al. (2002). "Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater". Proc Natl Acad Sci USA 99 (2): 996–1001. DOI:10.1073/pnas.022493799. PMC 117419. PMID 11792842. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=11792842.
  61. ^ Bruggemann H et al. (2003). "The genome sequence of Clostridium tetani, the causative agent of tetanus disease". Proc Natl Acad Sci USA 100 (3): 1316–21. DOI:10.1073/pnas.0335853100. PMC 298770. PMID 12552129. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12552129.
  62. ^ Nonaka H et al. (2006). "Complete genome sequence of the dehalorespiring bacterium Desulfitobacterium hafniense Y51 and comparison with Dehalococcoides ethenogenes 195". J Bacteriol 188 (6): 2262–74. DOI:10.1128/JB.188.6.2262-2274.2006. PMC 1428132. PMID 16513756. http://jb.asm.org/cgi/pmidlookup?view=long&pmid=16513756.
  63. ^ Paulsen IT et al. (2003). "Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis". Science 299 (5615): 2071–4. DOI:10.1126/science.1080613. PMID 12663927. http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=12663927.
  64. ^ Takami H et al. (2004). "Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus". Nucleic Acids Res 32 (21): 6292–303. DOI:10.1093/nar/gkh970. PMC 535678. PMID 15576355. http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=15576355.
  65. ^ Altermann E et al. (2005). "Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM". Proc Natl Acad Sci USA 102 (11): 3906–12. DOI:10.1073/pnas.0409188102. PMC 554803. PMID 15671160. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15671160.
  66. ^ a b Pridmore RD et al. (2004). "The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533". Proc Natl Acad Sci USA 101 (8): 2512–7. DOI:10.1073/pnas.0307327101. PMC 356981. PMID 14983040. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=14983040.
  67. ^ Bolotin A et al. (2001). "The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403". Genome Res 11 (5): 731–53. DOI:10.1101/gr.169701. PMC 311110. PMID 11337471. http://www.genome.org/cgi/pmidlookup?view=long&pmid=11337471.
  68. ^ a b Glaser P et al. (2001). "Comparative genomics of Listeria species". Science 294 (5543): 849–52. DOI:10.1126/science.1063447. PMID 11679669. http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=11679669.
  69. ^ Nelson KE et al. (2004). "Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species". Nucleic Acids Res 32 (8): 2386–95. DOI:10.1093/nar/gkh562. PMC 419451. PMID 15115801. http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=15115801.
  70. ^ Lu J, Nogi Y, Takami H. (2001). "Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge". FEMS Microbiol Lett 205 (2): 291–7. DOI:10.1111/j.1574-6968.2001.tb10963.x. PMID 11750818. http://linkinghub.elsevier.com/retrieve/pii/S0378109701004931.
  71. ^ a b Gill SR et al. (2005). "Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain". J Bacteriol 187 (7): 2426–38. DOI:10.1128/JB.187.7.2426-2438.2005. PMC 1065214. PMID 15774886. http://jb.asm.org/cgi/pmidlookup?view=long&pmid=15774886.
  72. ^ a b c d Holden MT et al. (2004). "Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance". Proc Natl Acad Sci USA 101 (26): 9786–91. DOI:10.1073/pnas.0402521101. PMC 470752. PMID 15213324. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15213324.
  73. ^ a b Kuroda M et al. (2001). "Whole genome sequencing of meticillin-resistant Staphylococcus aureus". Lancet 357 (9264): 1225–40. DOI:10.1016/S0140-6736(00)04403-2. PMID 11418146. http://linkinghub.elsevier.com/retrieve/pii/S0140673600044032.
  74. ^ Baba T et al. (2002). "Genome and virulence determinants of high virulence community-acquired MRSA". Lancet 359 (9320): 1819–27. DOI:10.1016/S0140-6736(02)08713-5. PMID 12044378. http://linkinghub.elsevier.com/retrieve/pii/S0140673602087135.
  75. ^ Diep BA et al. (2006). "Complete genome sequence of USA300, an epidemic clone of community-acquired meticillin-resistant Staphylococcus aureus". Lancet 367 (9512): 731–9. DOI:10.1016/S0140-6736(06)68231-7. PMID 16517273. http://linkinghub.elsevier.com/retrieve/pii/S0140-6736(06)68231-7.
  76. ^ Takeuchi F et al. (2005). "Whole-genome sequencing of Staphylococcus haemolyticus uncovers the extreme plasticity of its genome and the evolution of human-colonizing staphylococcal species". J Bacteriol 187 (21): 7292–308. DOI:10.1128/JB.187.21.7292-7308.2005. PMC 1272970. PMID 16237012. http://jb.asm.org/cgi/pmidlookup?view=long&pmid=16237012.
  77. ^ Kuroda M et al. (2005). "Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection". Proc Natl Acad Sci USA 102 (37): 13272–7. DOI:10.1073/pnas.0502950102. PMC 1201578. PMID 16135568. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=16135568.
  78. ^ Tettelin H et al. (2005). "Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"". Proc Natl Acad Sci USA 102 (39): 13950–5. DOI:10.1073/pnas.0506758102. PMC 1216834. PMID 16172379. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=16172379.
  79. ^ Glaser P et al. (2002). "Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease". Mol Microbiol 45 (6): 1499–513. DOI:10.1046/j.1365-2958.2002.03126.x. PMID 12354221. http://www.blackwell-synergy.com/openurl?genre=article&sid=nlm:pubmed&issn=0950-382X&date=2002&volume=45&issue=6&spage=1499.
  80. ^ Tettelin H et al. (2002). "Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae". Proc Natl Acad Sci USA 99 (19): 12391–6. DOI:10.1073/pnas.182380799. PMC 129455. PMID 12200547. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12200547.
  81. ^ Ajdić D et al. (2002). "Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen". Proc Natl Acad Sci USA 99 (22): 14434–9. DOI:10.1073/pnas.172501299. PMC 137901. PMID 12397186. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12397186.
  82. ^ Hoskins J et al. (2001). "Genome of the bacterium Streptococcus pneumoniae strain R6". J Bacteriol 183 (19): 5709–17. DOI:10.1128/JB.183.19.5709-5717.2001. PMC 95463. PMID 11544234. http://jb.asm.org/cgi/pmidlookup?view=long&pmid=11544234.
  83. ^ Tettelin H et al. (2001). "Complete genome sequence of a virulent isolate of Streptococcus pneumoniae". Science 293 (5529): 498–506. DOI:10.1126/science.1061217. PMID 11463916. http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=11463916.
  84. ^ a b c d Beres SB et al. (2006). "Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus". Proc Natl Acad Sci USA 103 (18): 7059–64. DOI:10.1073/pnas.0510279103. PMC 1459018. PMID 16636287. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=16636287.
  85. ^ Banks DJ et al. (2004). "Progress toward characterization of the group A Streptococcus metagenome: complete genome sequence of a macrolide-resistant serotype M6 strain". J Infect Dis 190 (4): 727–38. DOI:10.1086/422697. PMID 15272401. http://www.journals.uchicago.edu/cgi-bin/resolve?JID32312.
  86. ^ Beres SB et al. (2002). "Genome sequence of a serotype M3 strain of group A Streptococcus: phage-encoded toxins, the high-virulence phenotype, and clone emergence". Proc Natl Acad Sci USA 99 (15): 10078–83. DOI:10.1073/pnas.152298499. PMC 126627. PMID 12122206. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12122206.
  87. ^ Sumby P et al. (2005). "Evolutionary origin and emergence of a highly successful clone of serotype M1 group a Streptococcus involved multiple horizontal gene transfer events". J Infect Dis 192 (5): 771–82. DOI:10.1086/432514. PMID 16088826. http://www.journals.uchicago.edu/cgi-bin/resolve?JID34324.
  88. ^ Green NM et al. (2005). "Genome sequence of a serotype M28 strain of group a streptococcus: potential new insights into puerperal sepsis and bacterial disease specificity". J Infect Dis 192 (5): 760–70. DOI:10.1086/430618. PMID 16088825. http://www.journals.uchicago.edu/cgi-bin/resolve?JID33878.
  89. ^ Smoot JC et al. (2002). "Genome sequence and comparative microarray analysis of serotype M18 group A Streptococcus strains associated with acute rheumatic fever outbreaks". Proc Natl Acad Sci USA 99 (7): 4668–73. DOI:10.1073/pnas.062526099. PMC 123705. PMID 11917108. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=11917108.
  90. ^ Ferretti JJ et al. (2001). "Complete genome sequence of an M1 strain of Streptococcus pyogenes". Proc Natl Acad Sci USA 98 (8): 4658–63. DOI:10.1073/pnas.071559398. PMC 31890. PMID 11296296. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=11296296.
  91. ^ Nakagawa I et al. (2003). "Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolution". Genome Res 13 (6A): 1042–55. DOI:10.1101/gr.1096703. PMC 403657. PMID 12799345. http://www.genome.org/cgi/pmidlookup?view=long&pmid=12799345.
  92. ^ a b Bolotin A et al. (2004). "Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus". Nat Biotechnol 22 (12): 1554–8. DOI:10.1038/nbt1034. PMID 15543133.
  93. ^ Kapatral V et al. (2002). "Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586". J Bacteriol 184 (7): 2005–18. DOI:10.1128/JB.184.7.2005-2018.2002. PMC 134920. PMID 11889109. http://jb.asm.org/cgi/pmidlookup?view=long&pmid=11889109.
  94. ^ Goodner B et al. (2001). "Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58". Science 294 (5550): 2323–8. DOI:10.1126/science.1066803. PMID 11743194. http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=11743194.
  95. ^ Brayton KA et al. (2005). "Complete genome sequencing of Anaplasma marginale reveals that the surface is skewed to two superfamilies of outer membrane proteins". Proc Natl Acad Sci USA 102 (3): 844–9. DOI:10.1073/pnas.0406656102. PMC 545514. PMID 15618402. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15618402.
  96. ^ a b c Dunning Hotopp JC et al. (2006). "Comparative genomics of emerging human ehrlichiosis agents". PLoS Genet 2 (2): e21. DOI:10.1371/journal.pgen.0020021. PMC 1366493. PMID 16482227. http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.0020021.
  97. ^ a b Alsmark CM et al. (2004). "The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae". Proc Natl Acad Sci USA 101 (26): 9716–21. DOI:10.1073/pnas.0305659101. PMC 470741. PMID 15210978. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15210978.
  98. ^ Kaneko T et al. (2002). "Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110". DNA Res 9 (6): 189–97. DOI:10.1093/dnares/9.6.189. PMID 12597275. http://dnaresearch.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=12597275.
  99. ^ a b Chain PS et al. (2005). "Whole-genome analyses of speciation events in pathogenic Brucellae". Infect Immun 73 (12): 8353–61. DOI:10.1128/IAI.73.12.8353-8361.2005. PMC 1307078. PMID 16299333. http://iai.asm.org/cgi/pmidlookup?view=long&pmid=16299333.
  100. ^ a b Halling SM et al. (2005). "Completion of the genome sequence of Brucella abortus and comparison to the highly similar genomes of Brucella melitensis and Brucella suis". J Bacteriol 187 (8): 2715–26. DOI:10.1128/JB.187.8.2715-2726.2005. PMC 1070361. PMID 15805518. http://jb.asm.org/cgi/pmidlookup?view=long&pmid=15805518.
  101. ^ a b DelVecchio VG et al. (2002). "The genome sequence of the facultative intracellular pathogen Brucella melitensis". Proc Natl Acad Sci USA 99 (1): 443–8. DOI:10.1073/pnas.221575398. PMC 117579. PMID 11756688. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=11756688.
  102. ^ a b Paulsen IT et al. (2002). "The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts". Proc Natl Acad Sci USA 99 (20): 13148–53. DOI:10.1073/pnas.192319099. PMC 130601. PMID 12271122. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12271122.
  103. ^ Nierman WC et al. (2001). "Complete genome sequence of Caulobacter crescentus". Proc Natl Acad Sci USA 98 (7): 4136–41. DOI:10.1073/pnas.061029298. PMC 31192. PMID 11259647. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=11259647.
  104. ^ Collins NE et al. (2005). "The genome of the heartwater agent Ehrlichia ruminantium contains multiple tandem repeats of actively variable copy number". Proc Natl Acad Sci USA 102 (3): 838–43. DOI:10.1073/pnas.0406633102. PMC 545511. PMID 15637156. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15637156.
  105. ^ Prust C et al. (2005). "Complete genome sequence of the acetic acid bacterium Gluconobacter oxydans". Nat Biotechnol 23 (2): 195–200. DOI:10.1038/nbt1062. PMID 15665824.
  106. ^ Matsunaga T et al. (2005). "Complete genome sequence of the facultative anaerobic magnetotactic bacterium Magnetospirillum sp. strain AMB-1". DNA Res 12 (3): 157–66. DOI:10.1093/dnares/dsi002. PMID 16303747. http://dnaresearch.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=16303747.
  107. ^ Kaneko T et al. (2000). "Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti". DNA Res 7 (6): 331–8. DOI:10.1093/dnares/7.6.331. PMID 11214968. http://dnaresearch.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=11214968.
  108. ^ Giovannoni SJ et al. (2005). "Genome streamlining in a cosmopolitan oceanic bacterium". Science 309 (5738): 1242–5. DOI:10.1126/science.1114057. PMID 16109880. http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=16109880.
  109. ^ González V et al. (2006). "The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons". Proc Natl Acad Sci USA 103 (10): 3834–9. DOI:10.1073/pnas.0508502103. PMC 1383491. PMID 16505379. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=16505379.
  110. ^ Larimer FW et al. (2004). "Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris". Nat Biotechnol 22 (1): 55–61. DOI:10.1038/nbt923. PMID 14704707.
  111. ^ Ogata H et al. (2000). "Selfish DNA in protein-coding genes of Rickettsia". Science 290 (5490): 347–50. DOI:10.1126/science.290.5490.347. PMID 11030655. http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=11030655.
  112. ^ Ogata H et al. (2005). "The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite". PLoS Biol 3 (8): e248. DOI:10.1371/journal.pbio.0030248. PMC 1166351. PMID 15984913. http://biology.plosjournals.org/perlserv/?request=get-document&doi=10.1371/journal.pbio.0030248.
  113. ^ Andersson SG et al. (1998). "The genome sequence of Rickettsia prowazekii and the origin of mitochondria". Nature 396 (6707): 133–40. DOI:10.1038/24094. PMID 9823893.
  114. ^ McLeod MP et al. (2004). "Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae". J Bacteriol 186 (17): 5842–55. DOI:10.1128/JB.186.17.5842-5855.2004. PMC 516817. PMID 15317790. http://jb.asm.org/cgi/pmidlookup?view=long&pmid=15317790.
  115. ^ Moran MA et al. (2004). "Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment". Nature 432 (7019): 910–3. DOI:10.1038/nature03170. PMID 15602564.
  116. ^ http://genome.jgi-psf.org/sinme/sinme.home.html
  117. ^ Capela D et al. (2001). "Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021". Proc Natl Acad Sci USA 98 (17): 9877–82. DOI:10.1073/pnas.161294398. PMC 55546. PMID 11481430. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=11481430.
  118. ^ Foster J et al. (2005). "The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode". PLoS Biol 3 (4): e121. DOI:10.1371/journal.pbio.0030121. PMC 1069646. PMID 15780005. http://biology.plosjournals.org/perlserv/?request=get-document&doi=10.1371/journal.pbio.0030121.
  119. ^ Wu M et al. (2004). "Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements". PLoS Biol 2 (3): E69. DOI:10.1371/journal.pbio.0020069. PMC 368164. PMID 15024419. http://biology.plosjournals.org/perlserv/?request=get-document&doi=10.1371/journal.pbio.0020069.
  120. ^ Seo JS et al. (2005). "The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4". Nat Biotechnol 23 (1): 63–8. DOI:10.1038/nbt1045. PMID 15592456.
  121. ^ Rabus R et al. (2002). "Genes involved in the anaerobic degradation of ethylbenzene in a denitrifying bacterium, strain EbN1". Arch Microbiol 178 (6): 506–16. DOI:10.1007/s00203-002-0487-2. PMID 12420173.
  122. ^ Nierman WC et al. (2004). "Structural flexibility in the Burkholderia mallei genome". Proc Natl Acad Sci USA 101 (39): 14246–51. DOI:10.1073/pnas.0403306101. PMC 521142. PMID 15377793. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15377793.
  123. ^ a b BMC Genomics. 2005 Dec 7, Dec
  124. ^ Brazilian National Genome Project Consortium. (2003). "The complete genome sequence of Chromobacterium violaceum reveals remarkable and exploitable bacterial adaptability". Proc Natl Acad Sci USA 100 (20): 11660–5. DOI:10.1073/pnas.1832124100. PMC 208814. PMID 14500782. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=14500782.
  125. ^ Parkhill J et al. (2000). "Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491". Nature 404 (6777): 502–6. DOI:10.1038/35006655. PMID 10761919.
  126. ^ Tettelin H et al. (2000). "Complete genome sequence of Neisseria meningitidis serogroup B strain MC58". Science 287 (5459): 1809–15. DOI:10.1126/science.287.5459.1809. PMID 10710307. http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=10710307.
  127. ^ Chain P et al. (2003). "Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea". J Bacteriol 185 (9): 2759–73. DOI:10.1128/JB.185.9.2759-2773.2003. PMC 154410. PMID 12700255. http://jb.asm.org/cgi/pmidlookup?view=long&pmid=12700255.
  128. ^ a b Salanoubat M et al. (2002). "Genome sequence of the plant pathogen Ralstonia solanacearum". Nature 415 (6871): 497–502. DOI:10.1038/415497a. PMID 11823852.
  129. ^ Barbe V et al. (2004). "Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium". Nucleic Acids Res 32 (19): 5766–79. DOI:10.1093/nar/gkh910. PMC 528795. PMID 15514110. http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=15514110.
  130. ^ Gil R et al. (2003). "The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes". Proc Natl Acad Sci USA 100 (16): 9388–93. DOI:10.1073/pnas.1533499100. PMC 170928. PMID 12886019. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12886019.
  131. ^ Degnan PH et al. (2005). "Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects". Genome Res 15 (8): 1023–33. DOI:10.1101/gr.3771305. PMC 1182215. PMID 16077009. http://www.genome.org/cgi/pmidlookup?view=long&pmid=16077009.
  132. ^ Shigenobu S et al. (2000). "Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS". Nature 407 (6800): 81–6. DOI:10.1038/35024074. PMID 10993077.
  133. ^ van Ham RC et al. (2003). "Reductive genome evolution in Buchnera aphidicola". Proc Natl Acad Sci USA 100 (2): 581–6. DOI:10.1073/pnas.0235981100. PMC 141039. PMID 12522265. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12522265.
  134. ^ Tamas I et al. (2002). "50 million years of genomic stasis in endosymbiotic bacteria". Science 296 (5577): 2376–9. DOI:10.1126/science.1071278. PMID 12089438. http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=12089438.
  135. ^ Nakabachi A et al. (2006). "The 160-kilobase genome of the bacterial endosymbiont Carsonella". Science 314 (5797): 267. DOI:10.1126/science.1134196. PMID 17038615. http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=17038615.
  136. ^ Seshadri R et al. (2003). "Complete genome sequence of the Q-fever pathogen Coxiella burnetii". Proc Natl Acad Sci USA 100 (9): 5455–60. DOI:10.1073/pnas.0931379100. PMC 154366. PMID 12704232. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12704232.
  137. ^ Welch RA et al. (2002). "Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli". Proc Natl Acad Sci USA 99 (26): 17020–4. DOI:10.1073/pnas.252529799. PMC 139262. PMID 12471157. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12471157.
  138. ^ Blattner FR et al. (1997). "The complete genome sequence of Escherichia coli K-12". Science 277 (5331): 1453–74. DOI:10.1126/science.277.5331.1453. PMID 9278503. http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=9278503.
  139. ^ Riley M et al. (2006). "Escherichia coli K-12: a cooperatively developed annotation snapshot—2005". Nucleic Acids Res 34 (1): 1–9. DOI:10.1093/nar/gkj405. PMC 1325200. PMID 16397293. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1325200.
  140. ^ Perna NT et al. (2001). "Genome sequence of enterohaemorrhagic Escherichia coli O157:H7". Nature 409 (6819): 529–33. DOI:10.1038/35054089. PMID 11206551.
  141. ^ Makino, K. et al. (1999). "Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak". Genes and Genetic Systems 74 (5): 227–39. DOI:10.1266/ggs.74.227. PMID 10734605. http://www.jstage.jst.go.jp/article/ggs/74/5/74_227/_article/-char/en.
  142. ^ Larsson P et al. (2005). "The complete genome sequence of Francisella tularensis, the causative agent of tularemia". Nat Genet 37 (2): 153–9. DOI:10.1038/ng1499. PMID 15640799.
  143. ^ Harrison A et al. (2005). "Genomic sequence of an otitis media isolate of nontypeable Haemophilus influenzae: comparative study with H. influenzae serotype d, strain KW20". J Bacteriol 187 (13): 4627–36. DOI:10.1128/JB.187.13.4627-4636.2005. PMC 1151754. PMID 15968074. http://jb.asm.org/cgi/pmidlookup?view=long&pmid=15968074.
  144. ^ Fleischmann RD et al. (1995). "Whole-genome random sequencing and assembly of Haemophilus influenzae Rd". Science 269 (5223): 496–512. DOI:10.1126/science.7542800. PMID 7542800. http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=7542800.
  145. ^ Jeong H et al. (2005). "Genomic blueprint of Hahella chejuensis, a marine microbe producing an algicidal agent". Nucleic Acids Res 33 (22): 7066–73. DOI:10.1093/nar/gki1016. PMC 1312362. PMID 16352867. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1312362.
  146. ^ Hou S et al. (2004). "Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy". Proc Natl Acad Sci USA 101 (52): 18036–41. DOI:10.1073/pnas.0407638102. PMC 539801. PMID 15596722. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15596722.
  147. ^ a b Cazalet C et al. (2004). "Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity". Nat Genet 36 (11): 1165–73. DOI:10.1038/ng1447. PMID 15467720.
  148. ^ Ward N et al. (2004). "Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath)". PLoS Biol 2 (10): e303. DOI:10.1371/journal.pbio.0020303. PMC 517821. PMID 15383840. http://biology.plosjournals.org/perlserv/?request=get-document&doi=10.1371/journal.pbio.0020303.
  149. ^ May BJ et al. (2001). "Complete genomic sequence of Pasteurella multocida, Pm70". Proc Natl Acad Sci USA 98 (6): 3460–5. DOI:10.1073/pnas.051634598. PMC 30675. PMID 11248100. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=11248100.
  150. ^ a b Médigue C et al. (2005). "Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125". Genome Res 15 (10): 1325–35. DOI:10.1101/gr.4126905. PMC 1240074. PMID 16169927. http://www.genome.org/cgi/pmidlookup?view=long&pmid=16169927.
  151. ^ Stover CK et al. (2000). "Complete genome sequence of Pseudomonas aeruginosa PA01, an opportunistic pathogen". Nature 406 (6799): 959–64. DOI:10.1038/35023079. PMID 10984043.
  152. ^ Paulsen IT et al. (2005). "Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5". Nat Biotechnol 23 (7): 873–8. DOI:10.1038/nbt1110. PMID 15980861.
  153. ^ Nelson KE et al. (2002). "Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440". Environ Microbiol 4 (12): 799–808. DOI:10.1046/j.1462-2920.2002.00366.x. PMID 12534463. http://www.blackwell-synergy.com/openurl?genre=article&sid=nlm:pubmed&issn=1462-2912&date=2002&volume=4&issue=12&spage=799.
  154. ^ Feil H et al. (2005). "Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000". Proc Natl Acad Sci USA 102 (31): 11064–9. DOI:10.1073/pnas.0504930102. PMC 1182459. PMID 16043691. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=16043691.
  155. ^ Buell CR et al. (2003). "The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000". Proc Natl Acad Sci USA 100 (18): 10181–6. DOI:10.1073/pnas.1731982100. PMC 193536. PMID 12928499. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12928499.
  156. ^ http://microbewiki.kenyon.edu/index.php/Psychrobacter_cryohalolentis
  157. ^ McClelland M et al. (2004). "Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid". Nat Genet 36 (12): 1268–74. DOI:10.1038/ng1470. PMID 15531882.
  158. ^ Chiu CH et al. (2005). "The genome sequence of Salmonella enterica serovar Choleraesuis, a highly invasive and resistant zoonotic pathogen". Nucleic Acids Res 33 (5): 1690–8. DOI:10.1093/nar/gki297. PMC 1069006. PMID 15781495. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1069006.
  159. ^ Deng W et al. (2003). "Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18". J Bacteriol 185 (7): 2330–7. DOI:10.1128/JB.185.7.2330-2337.2003. PMC 151493. PMID 12644504. http://jb.asm.org/cgi/pmidlookup?view=long&pmid=12644504.
  160. ^ Parkhill J et al. (2001). "Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18". Nature 413 (6858): 848–52. DOI:10.1038/35101607. PMID 11677608.
  161. ^ McClelland M et al. (2001). "Complete genome sequence of Salmonella enterica serovar Typhimurium LT2". Nature 413 (6858): 852–6. DOI:10.1038/35101614. PMID 11677609.
  162. ^ Heidelberg JF et al. (2002). "Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis". Nat Biotechnol 20 (11): 1118–23. DOI:10.1038/nbt749. PMID 12368813.
  163. ^ a b c Yang F et al. (2005). "Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery". Nucleic Acids Res 33 (19): 6445–58. DOI:10.1093/nar/gki954. PMC 1278947. PMID 16275786. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1278947.
  164. ^ Wei J et al. (2003). "Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T". Infect Immun 71 (5): 2775–86. DOI:10.1128/IAI.71.5.2775-2786.2003. PMC 153260. PMID 12704152. http://iai.asm.org/cgi/pmidlookup?view=long&pmid=12704152.
  165. ^ Jin Q et al. (2002). "Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157". Nucleic Acids Res 30 (20): 4432–41. DOI:10.1093/nar/gkf566. PMC 137130. PMID 12384590. http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=12384590.
  166. ^ Toh H et al. (2006). "Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host". Genome Res 16 (2): 149–56. DOI:10.1101/gr.4106106. PMC 1361709. PMID 16365377. http://www.genome.org/cgi/pmidlookup?view=long&pmid=16365377.
  167. ^ a b Heidelberg JF et al. (2000). "DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae". Nature 406 (6795): 477–83. DOI:10.1038/35020000. PMID 10952301.
  168. ^ a b Ruby EG et al. (2005). "Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners". Proc Natl Acad Sci USA 102 (8): 3004–9. DOI:10.1073/pnas.0409900102. PMC 549501. PMID 15703294. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15703294.
  169. ^ a b Nasu H et al. (1 June 2000). "A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains". J Clin Microbiol 38 (6): 2156–61. PMC 86752. PMID 10834969. http://jcm.asm.org/cgi/pmidlookup?view=long&pmid=10834969.
  170. ^ a b Kim YR et al. (2003). "Characterization and pathogenic significance of Vibrio vulnificus antigens preferentially expressed in septicemic patients". Infect Immun 71 (10): 5461–71. DOI:10.1128/IAI.71.10.5461-5471.2003. PMC 201039. PMID 14500463. http://iai.asm.org/cgi/pmidlookup?view=long&pmid=14500463.
  171. ^ a b Chen CY et al. (2003). "Comparative genome analysis of Vibrio vulnificus, a marine pathogen". Genome Res 13 (12): 2577–87. DOI:10.1101/gr.1295503. PMC 403799. PMID 14656965. http://www.genome.org/cgi/pmidlookup?view=long&pmid=14656965.
  172. ^ Akman L et al. (2002). "Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia". Nat Genet 32 (3): 402–7. DOI:10.1038/ng986. PMID 12219091.
  173. ^ a b da Silva AC et al. (2002). "Comparison of the genomes of two Xanthomonas pathogens with differing host specificities". Nature 417 (6887): 459–63. DOI:10.1038/417459a. PMID 12024217.
  174. ^ Qian W et al. (2005). "Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris". Genome Res 15 (6): 757–67. DOI:10.1101/gr.3378705. PMC 1142466. PMID 15899963. http://www.genome.org/cgi/pmidlookup?view=long&pmid=15899963.
  175. ^ Thieme F et al. (2005). "Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence". J Bacteriol 187 (21): 7254–66. DOI:10.1128/JB.187.21.7254-7266.2005. PMC 1272972. PMID 16237009. http://jb.asm.org/cgi/pmidlookup?view=long&pmid=16237009.
  176. ^ Lee BM et al. (2005). "The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice". Nucleic Acids Res 33 (2): 577–86. DOI:10.1093/nar/gki206. PMC 548351. PMID 15673718. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=548351.
  177. ^ Simpson, A.J.C. et al. (2000). "The genome sequence of the plant pathogen Xylella fastidiosa". Nature. 406 (6792): 151–7. DOI:10.1038/35018003. PMID 10910347. http://www.nature.com/nature/journal/v406/n6792/abs/406151a0.html.
  178. ^ Van Sluys MA et al. (2003). "Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa". J Bacteriol 185 (3): 1018–26. DOI:10.1128/JB.185.3.1018-1026.2003. PMC 142809. PMID 12533478. http://jb.asm.org/cgi/pmidlookup?view=long&pmid=12533478.
  179. ^ Chain PS et al. (2006). "Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen". J Bacteriol 188 (12): 4453–63. DOI:10.1128/JB.00124-06. PMC 1482938. PMID 16740952. http://jb.asm.org/cgi/pmidlookup?view=long&pmid=16740952.
  180. ^ Parkhill J et al. (2001). "Genome sequence of Yersinia pestis, the causative agent of plague". Nature 413 (6855): 523–7. DOI:10.1038/35097083. PMID 11586360.
  181. ^ Deng W et al. (2002). "Genome sequence of Yersinia pestis KIM". J Bacteriol 184 (16): 4601–11. DOI:10.1128/JB.184.16.4601-4611.2002. PMC 135232. PMID 12142430. http://jb.asm.org/cgi/pmidlookup?view=long&pmid=12142430.
  182. ^ Song Y et al. (2004). "Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans". DNA Res 11 (3): 179–97. DOI:10.1093/dnares/11.3.179. PMID 15368893. http://dnaresearch.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=15368893.
  183. ^ Chain PS et al. (2004). "Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis". Proc Natl Acad Sci USA 101 (38): 13826–31. DOI:10.1073/pnas.0404012101. PMC 518763. PMID 15358858. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15358858.
  184. ^ Rendulic S et al. (2004). "A predator unmasked: life cycle of Bdellovibrio bacteriovorus from a genomic perspective". Science 303 (5658): 689–92. DOI:10.1126/science.1093027. PMID 14752164. http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=14752164.
  185. ^ Parkhill J et al. (2000). "The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences". Nature 403 (6770): 665–8. DOI:10.1038/35001088. PMID 10688204.
  186. ^ Fouts DE et al. (2005). "Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species". PLoS Biol 3 (1): e15. DOI:10.1371/journal.pbio.0030015. PMC 539331. PMID 15660156. http://biology.plosjournals.org/perlserv/?request=get-document&doi=10.1371/journal.pbio.0030015.
  187. ^ Heidelberg JF et al. (2004). "The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough". Nat Biotechnol 22 (5): 554–9. DOI:10.1038/nbt959. PMID 15077118.
  188. ^ Methé BA et al. (2003). "Genome of Geobacter sulfurreducens: metal reduction in subsurface environments". Science 302 (5652): 1967–9. DOI:10.1126/science.1088727. PMID 14671304. http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=14671304.
  189. ^ Suerbaum S et al. (2003). "The complete genome sequence of the carcinogenic bacterium Helicobacter hepaticus". Proc Natl Acad Sci USA 100 (13): 7901–6. DOI:10.1073/pnas.1332093100. PMC 164685. PMID 12810954. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=12810954.
  190. ^ Tomb JF et al. (1997). "The complete genome sequence of the gastric pathogen Helicobacter pylori". Nature 388 (6642): 539–47. DOI:10.1038/41483. PMID 9252185.
  191. ^ Alm RA et al. (1999). "Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori". Nature 397 (6715): 176–80. DOI:10.1038/16495. PMID 9923682.
  192. ^ Baar C et al. (2003). "Complete genome sequence and analysis of Wolinella succinogenes". Proc Natl Acad Sci USA 100 (20): 11690–5. DOI:10.1073/pnas.1932838100. PMC 208819. PMID 14500908. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=14500908.
  193. ^ Fraser CM et al. (1997). "Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi". Nature 390 (6660): 580–6. DOI:10.1038/37551. PMID 9403685.
  194. ^ Glöckner G et al. (2004). "Comparative analysis of the Borrelia garinii genome". Nucleic Acids Res 32 (20): 6038–46. DOI:10.1093/nar/gkh953. PMC 534632. PMID 15547252. http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=15547252.
  195. ^ a b Ren SX et al. (2003). "Unique physiological and pathogenic features of Leptospira interrogans revealed by whole-genome sequencing". Nature 422 (6934): 888–93. DOI:10.1038/nature01597. PMID 12712204.
  196. ^ a b Nascimento AL et al. (2004). "Comparative genomics of two Leptospira interrogans serovars reveals novel insights into physiology and pathogenesis". J Bacteriol 186 (7): 2164–72. DOI:10.1128/JB.186.7.2164-2172.2004. PMC 374407. PMID 15028702. http://jb.asm.org/cgi/pmidlookup?view=long&pmid=15028702.
  197. ^ Seshadri R et al. (2004). "Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes". Proc Natl Acad Sci USA 101 (15): 5646–51. DOI:10.1073/pnas.0307639101. PMC 397461. PMID 15064399. http://www.pnas.org/cgi/pmidlookup?view=long&pmid=15064399.
  198. ^ Fraser CM et al. (1998). "Complete genome sequence of Treponema pallidum, the syphilis spirochete". Science 281 (5375): 375–88. DOI:10.1126/science.281.5375.375. PMID 9665876. http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=9665876.
  199. ^ Guo Z, Chen P, Ren PJ, et al. (Oct 2011). "Genome sequence of duck pathogen Mycoplasma anatis strain 1340". J. Bacteriol. 193 (20): 5883-5884.
  200. ^ Papazisi L et al. (2003). "The complete genome sequence of the avian pathogen Mycoplasma gallisepticum strain R(low)". Microbiology 149 (Pt 9): 2307–16. DOI:10.1099/mic.0.26427-0. PMID 12949158. http://mic.sgmjournals.org/cgi/pmidlookup?view=long&pmid=12949158.
  201. ^ Fraser CM et al. (1995). "The minimal gene complement of Mycoplasma genitalium". Science 270 (5235): 397–403. DOI:10.1126/science.270.5235.397. PMID 7569993. http://www.sciencemag.org/cgi/pmidlookup?view=long&pmid=7569993.
  202. ^ Minion FC et al. (2004). "The genome sequence of Mycoplasma hyopneumoniae strain 232, the agent of swine mycoplasmosis". J Bacteriol 186 (21): 7123–33. DOI:10.1128/JB.186.21.7123-7133.2004. PMC 523201. PMID 15489423. http://jb.asm.org/cgi/pmidlookup?view=long&pmid=15489423.
  203. ^ a b c Vasconcelos AT et al. (2005). "Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae". J Bacteriol 187 (16): 5568–77. DOI:10.1128/JB.187.16.5568-5577.2005. PMC 1196056. PMID 16077101. http://jb.asm.org/cgi/pmidlookup?view=long&pmid=16077101.
  204. ^ Jaffe JD et al. (2004). "The complete genome and proteome of Mycoplasma mobile". Genome Res 14 (8): 1447–61. DOI:10.1101/gr.2674004. PMC 509254. PMID 15289470. http://www.genome.org/cgi/pmidlookup?view=long&pmid=15289470.
  205. ^ Westberg J et al. (2004). "The genome sequence of Mycoplasma mycoides subsp. mycoides SC type strain PG1T, the causative agent of contagious bovine pleuropneumonia (CBPP)". Genome Res 14 (2): 221–7. DOI:10.1101/gr.1673304. PMC 327097. PMID 14762060. http://www.genome.org/cgi/pmidlookup?view=long&pmid=14762060.
  206. ^ Sasaki Y et al. (2002). "The complete genomic sequence of Mycoplasma penetrans, an intracellular bacterial pathogen in humans". Nucleic Acids Res 30 (23): 5293–300. DOI:10.1093/nar/gkf667. PMC 137978. PMID 12466555. http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=12466555.
  207. ^ Himmelreich R et al. (1996). "Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae". Nucleic Acids Res 24 (22): 4420–49. DOI:10.1093/nar/24.22.4420. PMC 146264. PMID 8948633. http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=8948633.
  208. ^ Chambaud I et al. (2001). "The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis". Nucleic Acids Res 29 (10): 2145–53. DOI:10.1093/nar/29.10.2145. PMC 55444. PMID 11353084. http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=11353084.
  209. ^ Oshima K et al. (2004). "Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma". Nat Genet 36 (1): 27–9. DOI:10.1038/ng1277. PMID 14661021.
  210. ^ Glass JI et al. (2000). "The complete sequence of the mucosal pathogen Ureaplasma urealyticum". Nature 407 (6805): 757–62. DOI:10.1038/35037619. PMID 11048724.
  211. ^ Nelson KE et al. (1999). "Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima". Nature 399 (6734): 323–9. DOI:10.1038/20601. PMID 10360571.
Retrieved from "https://Biolecture.org/index.php?title=Bacterial_genomics&oldid=4519"