Difference between revisions of "Ilsun Yun/Homework2"

Latest revision as of 17:30, 6 December 2018

Noble Method of counting similarity of DNA sequence

Results(2d-array)

Sorted Result

Interpretation of the result

then count the diagonal line; because it means sequential.

This array means there is the longest length of duplicated contig is 12 nucleotides and 5 is one, 4 is one and 3 is 12 then etc.

So I can calculate the similarity by this result

@@ Line 1: / Line 1: @@
-<p>DNA alignment</p>
+<p><u><em><span style="font-size:18px">Noble Method of counting similarity of DNA sequence</span></em></u></p>
+<p>&nbsp;</p>
+<p><a href="http://biolecture.org/index.php/Ilsun_Yun/Homework2/SourceCode1"><strong>SourceCode_perl</strong></a></p>
+<p><a href="http://biolecture.org/index.php/Ilsun_Yun/Homework2/SourceCode"><strong>SourceCode_c++</strong></a></p>
+<p>&nbsp;</p>
+<p><strong>Results(2d-array)</strong></p>
+<p><img alt="" src="/ckfinder/userfiles/images/2d%20array.JPG" style="height:409px; width:409px" /></p>
+<p><strong>Sorted&nbsp;Result</strong></p>
+<p><img alt="" src="/ckfinder/userfiles/images/sorted.JPG" style="height:351px; width:199px" /></p>
+<p><strong>Interpretation of the result</strong></p>
+<p><img alt="" src="/ckfinder/userfiles/images/raw%20array.JPG" style="height:405px; width:405px" /></p>
+<p>then count&nbsp;the diagonal line; because it means&nbsp;sequential.</p>
+<p><img alt="" src="/ckfinder/userfiles/images/2d%20array.JPG" style="height:409px; width:409px" /></p>
+<p>This array means there is the longest length of duplicated contig is 12 nucleotides and 5 is one, 4 is one and 3 is 12 then etc.</p>
+<p>So I can calculate the similarity by this result</p>
+<p>&nbsp;</p>