Difference between revisions of "Perl Programming HW"
imported>MJ (Created page with "<p>Install and Learn BioPerl<br /> Make a Perl program translating 'all' combinations of triple bases into amino acids<br /> [[Make a Perl program to calculate th...") |
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<p>[[Install and Learn BioPerl]]<br /> | <p>[[Install and Learn BioPerl]]<br /> | ||
| − | [[Make a Perl program translating 'all' combinations of triple bases into amino acids]]<br /> | + | [[Make a Perl program translating 'all' combinations of triple bases into amino acids by MJ]]<br /> |
| − | [[Make a Perl program to calculate the lengths of DNA and protein sequences]]<br /> | + | [[Make a Perl program to calculate the lengths of DNA and protein sequences by MJ]]<br /> |
| − | [[Make a Perl program to calculate the length of a Mycoplasma genitalium bacterium]]<br /> | + | [[Make a Perl program to calculate the length of a Mycoplasma genitalium bacterium by MJ]]<br /> |
| − | [[Pick 5 protein sequences and predict their secondary structures using available prediction programs]]<br /> | + | [[Pick 5 protein sequences and predict their secondary structures using available prediction programs by MJ]]<br /> |
| − | [[Open and re-write one FASTA file containing one protein sequence of TERT]]<br /> | + | [[Open and re-write one FASTA file containing one protein sequence of TERT by MJ]]<br /> |
| − | [[Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file]]<br /> | + | [[Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file by MJ]]<br /> |
| − | [[Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file]]<br /> | + | [[Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file by MJ]]<br /> |
| − | [[In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc]]<br /> | + | [[In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc by MJ]]<br /> |
| − | [[Align two protein sequences using a dynamic programming method in Perl]]<br /> | + | [[Align two protein sequences using a dynamic programming method in Perl by MJ]]<br /> |
| − | [[Randomly generate five 100 AA long protein sequences and store them in a FASTA file]]<br /> | + | [[Randomly generate five 100 AA long protein sequences and store them in a FASTA file by MJ]]<br /> |
| − | [[Create a flat text file database of protein sequences with hash function in Perl]]<br /> | + | [[Create a flat text file database of protein sequences with hash function in Perl by MJ]]<br /> |
</p> | </p> | ||
Latest revision as of 03:10, 4 June 2018
Install and Learn BioPerl
Make a Perl program translating 'all' combinations of triple bases into amino acids by MJ
Make a Perl program to calculate the lengths of DNA and protein sequences by MJ
Make a Perl program to calculate the length of a Mycoplasma genitalium bacterium by MJ
Pick 5 protein sequences and predict their secondary structures using available prediction programs by MJ
Open and re-write one FASTA file containing one protein sequence of TERT by MJ
Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file by MJ
Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file by MJ
In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc by MJ
Align two protein sequences using a dynamic programming method in Perl by MJ
Randomly generate five 100 AA long protein sequences and store them in a FASTA file by MJ
Create a flat text file database of protein sequences with hash function in Perl by MJ
