Difference between revisions of "Programing - homework"
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imported>SeongEon Park (Created page with "<p><strong>1. Install and learn bioperl</strong></p> <p><strong>2. Make a perl grogram translating 'all' combinations of triple bases into amino acids</strong></...") |
imported>SeongEon Park |
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| − | <p><strong>[[ | + | <p><strong>[[+ Install and learn bioperl]]</strong></p> |
| − | <p><strong>[[ | + | <p><strong>[[+ Make a perl grogram translating 'all' combinations of triple bases into amino acids]]</strong></p> |
| − | <p><strong>[[ | + | <p><strong>[[+ Pick 5 protein sequences and predict their secondary structures using available prediction programs]]</strong></p> |
| − | <p><strong>[[ | + | <p><strong>[[+ Open and re-write one FASTA file containing one protein sequence of TERT]]</strong></p> |
| − | <p><strong>[[ | + | <p><strong>[[+ Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file]]</strong></p> |
| − | <p><strong> | + | <p><strong>+ In a multi-sequence FASTA file, produce statistics such as sequenec number, average seq length, GC content, AT content. etc</strong></p> |
| − | <p><strong> | + | <p><strong>+ Align two protein sequence using a dynamic programming method in Perl</strong></p> |
| − | <p><strong>[[ | + | <p><strong>[[+ Randomly generate five 100 AA long protein sequences and store them in a FASTA file]]</strong></p> |
| − | <p><strong> | + | <p><strong>+ Create a flat text file database of protein sequences with hash function in Perl</strong></p> |
| + | |||
| + | <p> </p> | ||
| + | |||
| + | <p> </p> | ||
| + | |||
| + | <p>[[SeongEon's content]]</p> | ||
<p> </p> | <p> </p> | ||
Latest revision as of 20:05, 8 June 2017
+ Make a perl grogram translating 'all' combinations of triple bases into amino acids
+ Open and re-write one FASTA file containing one protein sequence of TERT
+ Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file
+ In a multi-sequence FASTA file, produce statistics such as sequenec number, average seq length, GC content, AT content. etc
+ Align two protein sequence using a dynamic programming method in Perl
+ Randomly generate five 100 AA long protein sequences and store them in a FASTA file
+ Create a flat text file database of protein sequences with hash function in Perl
