2. Homework

1. Make a Perl program translating 'all' combinations of triple bases into amino acids _ MJ

2. Pick 5 protein sequences and predict their secondary structures using available prediction programs _ MJ

3. Open and re-write one FASTA file containing one protein sequence of TERT _ MJ

4. Create a FASTA file with a sequence. Open it and reverse the sequence of it and print it out in another FASTA file _ MJ

5. Extract a sequence MKKTGIKG from ASMKATAHQMKKTGIKGMSTYALLRL and print it out in a file _ MJ

6. In a multi-sequence FASTA file, produce statistics such as sequence number, average seq length, GC content, AT content, etc _ MJ

7. Align two protein sequences using a dynamic programming method in Perl _ MJ

8. Randomly generate five 100 AA long protein sequences and store them in a FASTA file _ MJ

9. Create a flat text file database of protein sequences with hash function in Perl _ MJ