Difference between revisions of "Homo sapiens RAD51"
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| − | <p><span style="font-size: | + | <p><span style="font-size:14px">>[[Perl Code of RAD51]]</span></p> |
<p> </p> | <p> </p> | ||
| − | <p><span style="font-size: | + | <p><span style="font-size:14px">[DNA sequence]</span></p> |
| − | <p><span style="font-size: | + | <p><span style="font-size:14px">ATGGCAATGCAGATGCAGCTTGAAGCAAATGCAGATACTTCAGTGGAAGAAGAAAGCTTTGGCCCACAACCCATTTCACGGTTAGAGCAGTGTGGCATAAATGCCAACGATGTGAAGAAATTG</span></p> |
| − | <p><span style="font-size: | + | <p><span style="font-size:14px">GAAGAAGCTGGATTCCATACTGTGGAGGCTGTTGCCTATGCGCCAAAGAAGGAGCTAATAAATATTAAGGGAATTAGTGAAGCCAAAGCTGATAAAATTCTGGCTGAGGCAGCTAAATTAGTTCC</span></p> |
| − | <p><span style="font-size: | + | <p><span style="font-size:14px">AATGGGTTTCACCACTGCAACTGAATTCCACCAAAGGCGGTCAGAGATCATACAGATTACTACTGGCTCCAAAGAGCTTGACAAACTACTTCAAGGTGGAATTGAGACTGGATCTATCACAGAA</span></p> |
| − | <p><span style="font-size: | + | <p><span style="font-size:14px">ATGTTTGGAGAATTCCGAACTGGGAAGACCCAGATCTGTCATACGCTAGCTGTCACCTGCCAGCTTCCCATTGACCGGGGTGGAGGTGAAGGAAAGGCCATGTACATTGACACTGAGGGTACC</span></p> |
| − | <p><span style="font-size: | + | <p><span style="font-size:14px">TTTAGGCCAGAACGGCTGCTGGCAGTGGCTGAGAGGTATGGTCTCTCTGGCAGTGATGTCCTGGATAATGTAGCATATGCTCGAGCGTTCAACACAGACCACCAGACCCAGCTCCTTTATCAAG</span></p> |
| − | <p><span style="font-size: | + | <p><span style="font-size:14px">CATCAGCCATGATGGTAGAATCTAGGTATGCACTGCTTATTGTAGACAGTGCCACCGCCCTTTACAGAACAGACTACTCGGGTCGAGGTGAGCTTTCAGCCAGGCAGATGCACTTGGCCAGGTT</span></p> |
| − | <p><span style="font-size: | + | <p><span style="font-size:14px">TCTGCGGATGCTTCTGCGACTCGCTGATGAGTTTGGTGTAGCAGTGGTAATCACTAATCAGGTGGTAGCTCAAGTGGATGGAGCAGCGATGTTTGCTGCTGATCCCAAAAAACCTATTGGAGGA</span></p> |
| − | <p><span style="font-size: | + | <p><span style="font-size:14px">AATATCATCGCCCATGCATCAACAACCAGATTGTATCTGAGGAAAGGAAGAGGGGAAACCAGAATCTGCAAAATCTACGACTCTCCCTGTCTTCCTGAAGCTGAAGCTATGTTCGCCATTAATGC</span></p> |
| − | <p><span style="font-size: | + | <p><span style="font-size:14px">AGATGGAGTGGGAGATGCCAAAGACTGA</span></p> |
<p> </p> | <p> </p> | ||
| − | <p><span style="font-size: | + | <p><span style="font-size:14px">[Amino acid sequence]</span></p> |
| − | <p><span style="font-size: | + | <p><span style="font-size:14px">MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFR<br /> |
TGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEF<br /> | TGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEF<br /> | ||
GVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD</span></p> | GVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD</span></p> | ||
| − | <p> | + | <p> </p> |
| − | <p> </p> | + | <p><span style="font-size:14px">[Second structure]</span></p> |
| + | |||
| + | <p>http://www.compbio.dundee.ac.uk/jpred4/results/jp_NixMuY3/jp_NixMuY3.results.html</p> | ||
| + | |||
| + | <p>Simple result : (<span style="color:#FF0000">H</span>=alpha helix <span style="color:#DAA520">E</span>=beta sheet)</p> | ||
| + | |||
| + | <p><code>---<span style="color:#FF0000">HHHHHHH</span>-----<span style="color:#FF0000">HH</span>----------<span style="color:#FF0000">H</span>------<span style="color:#FF0000">HHHHHHHHH</span>----<span style="color:#FF0000">HHHHHHH</span>--<span style="color:#FF0000">HHHHHHHH</span>---<span style="color:#FF0000">HHHHHHHHHHHHHH</span>-------<span style="color:#FF0000">HHHHHHHHH</span>---------<span style="color:#FF0000">HHHHHHH</span>-------<span style="color:#DAA520">EEEEEE</span>-----<span style="color:#FF0000">HHHHHHHHHHHHHHH</span>---------<span style="color:#DAA520">EEEEEE</span>------<span style="color:#FF0000">HHHHHHHHH</span>------<span style="color:#FF0000">HHHHHHHH</span><span style="color:#DAA520">EEE</span>---<span style="color:#FF0000">HHHHHHHHHHHHHHH</span>-----<span style="color:#DAA520">EEEEE</span>----------------<span style="color:#FF0000">HHHHHHHHHHHHHHHHHHHHH</span>---<span style="color:#DAA520">EEEEEEEEEE</span>-------------------<span style="color:#FF0000">HHHH</span>----<span style="color:#DAA520">EEEEE</span>-----<span style="color:#DAA520">EEEEEEEE</span>-------<span style="color:#DAA520">EEEEEEE</span>---------</code></p> | ||
| − | <p><span style="font-size: | + | <p><span style="font-size:14px">__________________________________________________________________________________________________________________________________________________________________________________________</span></p> |
| − | <p><span style="font-size: | + | <p><span style="font-size:14px">[[H.W.1]]</span></p> |
Latest revision as of 13:11, 26 May 2016
[DNA sequence]
ATGGCAATGCAGATGCAGCTTGAAGCAAATGCAGATACTTCAGTGGAAGAAGAAAGCTTTGGCCCACAACCCATTTCACGGTTAGAGCAGTGTGGCATAAATGCCAACGATGTGAAGAAATTG
GAAGAAGCTGGATTCCATACTGTGGAGGCTGTTGCCTATGCGCCAAAGAAGGAGCTAATAAATATTAAGGGAATTAGTGAAGCCAAAGCTGATAAAATTCTGGCTGAGGCAGCTAAATTAGTTCC
AATGGGTTTCACCACTGCAACTGAATTCCACCAAAGGCGGTCAGAGATCATACAGATTACTACTGGCTCCAAAGAGCTTGACAAACTACTTCAAGGTGGAATTGAGACTGGATCTATCACAGAA
ATGTTTGGAGAATTCCGAACTGGGAAGACCCAGATCTGTCATACGCTAGCTGTCACCTGCCAGCTTCCCATTGACCGGGGTGGAGGTGAAGGAAAGGCCATGTACATTGACACTGAGGGTACC
TTTAGGCCAGAACGGCTGCTGGCAGTGGCTGAGAGGTATGGTCTCTCTGGCAGTGATGTCCTGGATAATGTAGCATATGCTCGAGCGTTCAACACAGACCACCAGACCCAGCTCCTTTATCAAG
CATCAGCCATGATGGTAGAATCTAGGTATGCACTGCTTATTGTAGACAGTGCCACCGCCCTTTACAGAACAGACTACTCGGGTCGAGGTGAGCTTTCAGCCAGGCAGATGCACTTGGCCAGGTT
TCTGCGGATGCTTCTGCGACTCGCTGATGAGTTTGGTGTAGCAGTGGTAATCACTAATCAGGTGGTAGCTCAAGTGGATGGAGCAGCGATGTTTGCTGCTGATCCCAAAAAACCTATTGGAGGA
AATATCATCGCCCATGCATCAACAACCAGATTGTATCTGAGGAAAGGAAGAGGGGAAACCAGAATCTGCAAAATCTACGACTCTCCCTGTCTTCCTGAAGCTGAAGCTATGTTCGCCATTAATGC
AGATGGAGTGGGAGATGCCAAAGACTGA
[Amino acid sequence]
MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFR
TGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEF
GVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
[Second structure]
http://www.compbio.dundee.ac.uk/jpred4/results/jp_NixMuY3/jp_NixMuY3.results.html
Simple result : (H=alpha helix E=beta sheet)
---HHHHHHH-----HH----------H------HHHHHHHHH----HHHHHHH--HHHHHHHH---HHHHHHHHHHHHHH-------HHHHHHHHH---------HHHHHHH-------EEEEEE-----HHHHHHHHHHHHHHH---------EEEEEE------HHHHHHHHH------HHHHHHHHEEE---HHHHHHHHHHHHHHH-----EEEEE----------------HHHHHHHHHHHHHHHHHHHHH---EEEEEEEEEE-------------------HHHH----EEEEE-----EEEEEEEE-------EEEEEEE---------
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